EMAGE mouse gene expression spatial database

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EMAGE:16363

Tnrc18 trinucleotide repeat containing 18 ( MGI:3648294)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_017201. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_017201_01	euxassay_017201_02	euxassay_017201_03	euxassay_017201_04

euxassay_017201_05	euxassay_017201_06	euxassay_017201_07	euxassay_017201_08	euxassay_017201_09

euxassay_017201_10	euxassay_017201_11	euxassay_017201_12	euxassay_017201_13	euxassay_017201_14

euxassay_017201_15	euxassay_017201_16	euxassay_017201_17	euxassay_017201_18	euxassay_017201_19

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

16363_wholemount_strong.wlz

16363_wholemount_moderate.wlz

16363_wholemount_weak.wlz

16363_wholemount_possible.wlz

16363_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:16363_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Annotation Validation:

spatial mapping by EMAGE editor

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T7906
Entity Detected:	Tnrc18, trinucleotide repeat containing 18 ( MGI:3648294)
Sequence:	sense strand is shown >T7906 GGAGGGGAGCGGCGGCCGAGGGATGGCGGGCAGTACGGGCGCCTAGCCGCGCCAGGAACCGCGGCGGTTG CCGGAGTCGCCGTCGGAGCCTGGAGCCCGGAGCCCCGCCGCGCCAGATACCGTGTACGCCTCCTTCCTCA TCTCCGCTCAGCCGCCCGGAGGGGACTCACCGCGGGCGGTTCATGCGCCCCGGGCCGCGGGCCCGTGGTT GAGCGCAAGCCCCGCTGGCCGCCGCCATGCACGCCGCGGAGCGCCCGCCACCCGAGGACACTAGGACTAC ATCGAGGCCGAACTTTTAAGTCCCACTGAAGCAGGCCGGCGGGCCGGGTGGGGAGGCTGATCGCGGCACT CCCGCGGAGGATGGATGGCCGAGATTTCGGGCCCCAGCGGTCCGTCCACGGCCCCCCGCCGCCGCTGCTG TCCGGCTTGGCCATGGACAGCCACCGCGTGGGCGCGGCCACCGCCGGACGCTTGCCCTCCTCGGGCTTGC CAGGTCCCCCGCCGCCCGGGAAATACATGGCCGGTCTCAACCTTCACCCGCACCCGGGCTTCTCCCACCT GCCCAGTGGGCTATATCCATCCTACCTCCACCTGAACCACCTGGACCCCCCCAGCAGTGGGAGCCCCCTC CTCAGCCAGCTGGGTCAGCCCAGCATCTTCGATACCCAGAAAGATGGCTTCTACCTGCCCGCACCGGGGA CCCTGCATGCTCACACGCCCTCGTCCAGAACTCCCAGTGGCCACTCCTCAGGTGGTCCAGCCAAAGGCTC CTCCCGGGAAGGTACAGGGAAGGATCGTGCAGGCCGTGGTGGAGACCCTCCTCCGTTGTTTGGCAAGAAA GACCCTCGGGCACGTGAGGAGGTGTCCGGGCCCCGAGGTGTGGTGGACTTGACCCAGGAGGCCCGAGCGG AGGGCCGCCAGGACCGAGGATCCTCACGCCTGGCTGAGCGCCTGTCTCCCTTTCTGGCAGAGGTCAAAGC CAAGGGTGCACTGCAGCCGTCGGCCCTGAGCCTGTGCAATGGTGTGGTGGACGCGGGGCTGGTGGCCGAG TTGGGCCGTGGAGGTGCCAAGGAGGTAGCCAGGCAGGAGGAGAATGCTCGGCTGCTGAGGCGGGCTGAGG CCCTGCTGCCCGCTGCAAGGCCCTGTGGGTCCCCACTACCGCCGCCACCTCCACTGCCCCCCAAGGGTCC CCCTGCACCCCCTTCCTCTACACCAGCCGGTGTGTACACCGTGTTCCGTGAACCAGGCCGTGAGCACCGC GTGGTGGCACCCACCTTTGTGCCTTCTGTGGAGGCCTTTGATGAGCGGGTGGGACCCATCCAGATAGCAT CCCAGGCTCGCGATGTCCGGGCCAGGGAGCGTGAGCCGGGCCGTCCTGGGGTCCTGCAAGGTCCACCCGG ATCTCCACGCCTGGAGCGGCCAGAGGTTCTGCGGGAGAAAAGCTCGGTCATCCGCTCCCTCAAGCGTCCG CCTCCATCCGATGGACCCCCAGCAGCCCGCTCCTCCCGCTCCTCCCCGGATGCGCGAGCCTACCTGCCCC CCAAGGAACTACTCAAGCCCGAGGCTGATCCGAGGCCTTGCGAGCGCGCACCCCGAGGCCCGAGCGCTTC TGCTGCCCAGCAGGCTGCTAAGCTCTTTGGCCTGGAACCATCCCGACCCCCCGGGCCGGAGCATAAGTGG AAACCCTTTGAACTGGGCAACTTCGCCACCACGCAGATGGCTGTCCTGGCAGCCCAGCACCACCATGCCA GCAGAGCCGAAGAGGAAGCAGCTGTCGCCACAGCATCCAAAAAGGCCTACCTGGACCCCGGGGGCGCAAT GCCCCGTGCCTCGGCCACCTGCGGCAGGCCAGGTGCTGACCTCCACTCGGCAGCCCACGGACCCGGAGAG GCCTCTGCTATGCAGAGCCTCATCAAATACAGCGGTAGCTTTGCTCGGGAGGCGGTGGCAGTGCGCCCTG GTGGCTGTGGGAAGAAGAGCCCCTTTGGAGGCCTGGGCACCATGAAACCTGAACCTACGCCCACGTCGGC GGGTCCCCCTAGAGCCCAGGCCCGGCTCACACACCCCGGGGTCCCTACAGCCGGAGGGGGCCGGCAGCTG AAACGGGACCCAGAGAGACCTGAGAGCGCCAAGGCCTTTGGGAGAGAGGGCTCTGGTGCCCAGGGGGAAG CCGAAGTAAGACACCCGCCTGTTGGCATTGCTGTGGCTGTGGCCCGGCAGAAGGACAGTGGAAGCAGTAG CCGGCTGGGGCCTGGGCTGGGAGACCAGGAACGCACTTTGTCACTGAACAATGTCAAAGGGCATGGCCGG ACTGATGATGAGTGTGATCGAGCCAGGCATCGGGAGGATCGGCTGCTAGGGACACGGCTGGACCGGGACC AGGAGAAGTTGCTCCGAGAAAGTAAGGAGCTGGCTGACCTGGCCCGTCTACACCCCACCAGCTGCGCTCC CAATGGCCTGAACCCCAACCTTATGGTGACTGGTGGCCCAACGCTGGCAGGCTCGGGACGCTGGTCTGCT GATCCTGCTGCTCATTTGGCCACGAACCCCTGGCTGCCACGCTCGGGTAGTACATCCATGTGGCTTGCCG GACACCCTTATGGCCTGGGACCCCCCTCTTTGCACCAGGGCATGGCCCCTGCATTTCCACCTGGCTTAGG GGGCTCCTTGCCGTCAGCTTACCAGTTCGTCAGGGACCCCCAGTCTGGCCAGCTGGTGGTTATCCCTAGT GATCACCTGCCTCATTTTGCCGAGCTGATGGAGCGCGCGGCGGTGCCGCCCCTCTGGCCGGCCCTGTACC CACCAGGCCGCAGCCCACTGCACCACGCTCAGCAGCTGCAGCTCTTCTCTCAGCAGCACTTTTTGAGGCA GCAAGAACTGCTCTACCTGCAACAGCAGGCGGCCCAGGCCCTGGAGCTGCAGCGGAGCGCACAGCTGGTG GAGCGGTTGAAAGCACAAGAGCATCGAACGGAGATGGAGGAGAAGATTAGCAAGAGGAGCCTGGAGACCA CGGGCAAGGCCGGCCTGAGTGCCGCAGGCCCTGGGCTCCTGCCTCGAAAGTCTGCCGGCCTGGCCAACGG CCCGGCAGGCAGCCACGGCAAGGCCGTGAGCCCACCCCCGTCTCCCCGAGCCTCCCCCGTGACCTCTCTG AAGGCCAAGGTCATCCAGAAGGTGGAAGATGTGTCTAAGCCTCCAGCCTATACCTACCCCGCCACACCTA GCTCGCACCCCAGCAGCCCACCACCTGCCTCCCCACCTCCTACCCCTGGGCTCACCCGAAAGGAAGAGGC TCCCGAGAACGTGGTGGAGAAGAAAGACCTGGAGTTGGAGAAGGAGACGCCCAGTCCGTTCCAGGCCCTG TTCACAGATATTCCTCCCAGGTATCCATTCCAAGCCCTGCCGCCGCACTACGGGCGACCCTACCCCTTCC TGCTGCAACCCGCTGCGGCCTCTGATGCCGATGGCCTCGCCCCAGATGTGCCACTCCCAGCTGATGGGCC CGAGCGCCTGGCACTGTCTCCTGAAGATAAGCCCATCTGCCTGTCACCCTCCAAGATCCCAGAGCCACCT CGGGACAGCCCAGAGGAGGAGCAGCTGGCTGACCGGGAGGTGAAGGCTGAAGTTGAGGATATCGAAGAGG GCCCCACAGAACTGCCTCCCCTTGAGTCACCATTGGCCCTGCCCGTCCCAGAGACCATGGTGGCCGTGAG CCCCGCAGGTGGCTGTGGAGGTAGTCCTCTCGAGGCCCAGGCGTTGAGCACAGCAGGTCCGGGCTGCCGG GAGCCCTCTGAAGTTTCAGACTTTGCACAGGTTGCCGAGCCGCAGATAGAACTACCGAGTAAGACAGAGC ACCGCATGACTGCCCTGGAGTTGGGGACACAGCTGACACCCGAGCCACTGGTAGAGACTAAGGAAGAGCC GGTGGAGGTGCCCCTGGATGTGCCGATGGAGGAGCCCACCACAGAGGCAGGGCCTGAGGACAGTCTGCCC CAGCCATCTTTGACTGAGCCTCAGCCCAGCCTTGAGCTCTCAGACTGTGATTTGCCTGTCCCAGAGGGCC AGTGTCTCAACCTGGAGGCCCAGGAGGCTGTGCCTGCTCCTGCCAGTACCTGTTATCTGGAAGAGACCCA CTCCGAATCCCTCCTGCCTGGCCTGGATGACCCACTGGCCGGCATGAATGCACTGGCAGCTGCAGCCGAG CTGCCCCAAGCCAGGCCTCTGCCCTCCTTGGGTCCTGGAGTCCCAGCCGGGGAGAAGCTGGATACAGCCC CCAGCCTCGTCCTGGAACACAGCTTTCTGCAGGGCATCACCCTCTTGAGTGAGATAGCTGAGCTGGAGCT GGACCGGAGGGGCCAGGAGGCTGCAGATCCAGAGCCAAACCTGGTGGTGCGACCCTCCCTCGAAAGCCTG CTGGCAGCCAGCAGCCACATGTTGAAGGAGGTGCTGGAGAGCCCCTTCTCAGACCCGCTCAAGAACTTGC GGCTTCCGCGTGAACTGAACTCCAATAAGAAATATAGCTGGATGCAGAAGAAGGAAGAGCGGATGTTTGC TATGAAATCTTCCTTGGAGGACATGGATGCGCTAGAGCTGGACTTCCGGATGCGGCTGGCAGAGGTCCAG CGAAGGTACAAAGAGAAACAGCGGGAGTTGGTCAAGCTCCAGAGACGCCGGGACTCGGGGGACAGGCACG AGGATGCCCATAGAAGCCTGGCACGCAGAGGCCCTGGCAGGCCGAGGAAACGGACCCACACCCTGAGCGC CCTGTCGCCCCCCTGCAAGAGAGGGAAGAGCCACAGCAGTAGCGGAAAGCTGAGCAGCAAGTCCTTGCTG ACATCAGACGACTATGATCTGGGAGCGGGGATAAGGAAGAGACACAAGGGGCCCGAGGAGGAGCAAGAGG CCCTCATGGGCATGGGGAAAGCCCGCAGCAGGAACCAGAGCTGGGACGATCACGACTCCTCATCTGATTT TATGAGTCAGCTAAAGATTAAGAAAAAAAAGATGGCAAGCGACCAGGAGCAGTTGGCAAGCAAGCTAGAC AGAGCCCTCTCCCTCACAAAACAAGACAAGCTGAAGTCACCCTTCAAGTTTTCCGACGGCCCCGGGGGAA AACCGAAAACCGGTGGGGGCTGTGGCAGGTTCTTGACACAGTATGACAGCCTGCTGGGCAAGGACAGGAA AGCACTGGCCAAAGGACTCGGCTTGTCTCTGAAACCCTCCAGAGAAGGTAAACACAAAAGAGCTTCCAAA GCCAGGAAGATGGAGGGGGGCTTCCAGGCCAGAGGCCAGCCCAAGTCTGTCCATTCTCCATTTGCCTCGG AAGTCAGCAGTCAGTCTTACAATACGGACTCTGACGAAGACGAAGACTTCCTGAAGAATGAGTGGTCTGC CCAGGGCCCCTCCAGCTCCAAACTGACCTCGTCCCTCCTGTGTGGCATGGTGCCCAAGAACAGCAAGCCA GCCACAGGCCCTAAGCTGACCAAGAGGGGCCTGGCAGGCCCCCGGACTTTGAAACCCAAGGTGGTCACCA GCAGGAAGCAGTCCTTCTGTTTGCTGCTCCGAGAGGCTGAGGCCCGCTCCTCCTTCAGCGACTCTTCCGA GGAGGACTCCTTTGACCAAGGTTACTAGTGCCAAACACAAAATAACCTTCCATGTTTTTAGAGCGAGAGT GGGTGGGAGAGAGAGAGAGAGCAAGAGAGCAAGCGAGCGTGCGAGAGTGTGTGCGCACAGCAGGGATGGC TGTAGCCGTCTAGGTTTTTGGCAGCGTAGCCTGCCCTATCCGCCTATATTTTTGGTTTGTGTTTGCTTTT TATTTTTACTTAAACTTGTGATAACACACTAGCCAGCCCTTAGGGAGCTCTTACACGGACTTGTTTTTTA GTCTCCCAGAATTTCTCACCCTCCTCCCTCTGCACTCCACTAGTCCTCCCCAAGGGCCCCCACCCCCCCA CCTCCCAGATCCAAAAGCCCAACCTTACCTTCTCCATACCCCAGGCCGGCCTGGGTTTTCTCTTGGCATG AGCCTGGCGGAGGCTTGCCCAAGGAACATTTTGTATAAAAACAAAAAAACACAAAAAAACAAACAAACAA AAAAACCCCACAGAAAACAAAAAGGGACTTCTCGTGTGGGACTTGGCGTGTGACTTGCTGTTTGTACGCG GTTTTGGTAATGCCAAGCTTCATTAAACATACCGAGTTCATTTTTAAAAAAAAAAAAAAAAAAAAA
Notes:	The probe template was PCR amplified from IMAGE:6511384 using vector (pCMV-SPORT6.1) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:6511384 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:16362 same embryo
	EMAGE:16360 same embryo
	EMAGE:16361 same embryo
	EurExpress:euxassay_017201 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source