EMAGE mouse gene expression spatial database

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EMAGE:17044

Tnfaip8l2 tumor necrosis factor, alpha-induced protein 8-like 2 ( MGI:1917019)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_001447. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_001447_01	euxassay_001447_02	euxassay_001447_03	euxassay_001447_04

euxassay_001447_05	euxassay_001447_06	euxassay_001447_07	euxassay_001447_08	euxassay_001447_09

euxassay_001447_10	euxassay_001447_11	euxassay_001447_12	euxassay_001447_13	euxassay_001447_14

euxassay_001447_15	euxassay_001447_16	euxassay_001447_17	euxassay_001447_18	euxassay_001447_19

euxassay_001447_20	euxassay_001447_21	euxassay_001447_22	euxassay_001447_23	euxassay_001447_24

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

17044_wholemount_strong.wlz

17044_wholemount_moderate.wlz

17044_wholemount_weak.wlz

17044_wholemount_possible.wlz

17044_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:17044_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Annotation Validation:

spatial mapping by EMAGE editor

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T3225
Entity Detected:	Tnfaip8l2, tumor necrosis factor, alpha-induced protein 8-like 2 ( MGI:1917019)
Sequence:	sense strand is shown >T3225 TGGCCTCGAGCCAGATTCGGACGAGGCCAGTGACTGATCACACACCGACCGCAAGCACCATGGAGTCCTT CAGCTCAAAGAGTCTGGCACTACAAGCGGAGAAGAAGCTGCTGAGTAAAATGGCTGGTCGGTCCGTAGCG CATCTCTTTATCGACGAGACCAGCAGCGAGGTGCTAGACGAGCTTTACCGCGTGTCCAAAGAATACACGC ACAGCCGGCCCAAGGCACAGCGGGTGATCAAAGACCTCATCAAGGTAGCGGTTAAAGTGGCTGTGCTGCA CCGCAGTGGCTGCTTTGGCCCTGGGGAGCTGGCTCTGGCTACACGATTTCGTCAGAAGCTACGGCAGGGC GCCATGACCGCACTTAGCTTCGGTGAGGTGGACTTCACCTTTGAGGCTGCCGTGCTAGCAGGTCTGCTCG TCGAGTGCCGGGACATTCTGCTGGAGCTGGTGGAGCACCACCTCACACCCAAGTCACATGACCGCATCAG GCACGTGTTTGATCACTACTCTGACCCCGACCTGCTGGCTGCCCTCTATGGGCCTGACTTCACTCAGCAC CT
Notes:	The probe template was PCR amplified from IMAGE:2699272 using vector specific primers. Forward Primer - name:RZPD M13 forward, sequence:GCTATTACGCCAGCTGGCGAAAGGGGGATGTG; Reverse Primer - name:RZPD M13 reverse, sequence:CCCCAGGCTTTACACTTTATGCTTCCGGCTCG. Anti-sense probe was then transcribed from the PCR amplified template using T3 polymerase. EMAGE Editor's Note: the partial probe sequence indicated here was given by the EURExpress Consortium and has been checked using BLAST comparison against all available partial insert sequences of IMAGE:2699272 from NCBI. In cases where no BLAST hit was found (because the two sequence reads are found at opposing ends of the insert sequence), both end sequences were then checked against the appropriate cDNA RefSeq to ensure validity of the information.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:17040 same embryo
	EMAGE:17042 same embryo
	EMAGE:17045 same embryo
	EMAGE:17041 same embryo
	EMAGE:17043 same embryo
	EurExpress:euxassay_001447 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source