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EMAGE:17231

Osta organic solute transporter alpha ( MGI:2146634)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:17231 EMAGE:17231 EMAGE:17231 EMAGE:17231 EMAGE:17231
"Pseudo-wholemount" of euxassay_008877. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_008877_01 euxassay_008877_02 euxassay_008877_03 euxassay_008877_04
EMAGE:17231 EMAGE:17231 EMAGE:17231 EMAGE:17231 EMAGE:17231
euxassay_008877_05 euxassay_008877_06 euxassay_008877_07 euxassay_008877_08 euxassay_008877_09
EMAGE:17231 EMAGE:17231 EMAGE:17231
euxassay_008877_10 euxassay_008877_11 euxassay_008877_12

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:17231Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
17231_wholemount_strong.wlz
17231_wholemount_moderate.wlz
17231_wholemount_weak.wlz
17231_wholemount_possible.wlz
17231_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:17231_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Text Annotation:
StructureLevelPatternNotes
midgut
strong strong
regionalstrong expression: see section 01 02 03 04 05 06 07 08 09 10
Annotation Validation: spatial mapping by EMAGE editor, text annotation by author
Detection Reagent
Type:in situ hybridisation probe
Identifier:T4828
Entity Detected:Osta, organic solute transporter alpha ( MGI:2146634)
Sequence:sense strand is shown

>T4828
TGAGGAGGTAATGAAACAGGCGTGGAGGCTCCGCTTACTGTTTAGCCTTCACCCAGCTCTGAACAAGGCT
CTGAGAGCCTCAATACGGGACAGAAACCTCGCCACCCCTCAGTGGCTGTCCCTGCCTGACCCTCCTCGTC
CTCAGCGTCTGCCTGAGAGAAAAGAAGGATGGAGCCAGGCAGGACTCATATCAAACTTGACCCCAGGTAC
ACAGCAGAGCTTCTGGAACTTCTGGAGACCAATTACAGCATCTCCCCTGCCTGCTTCTCTCACCCTCCCA
CCGCAGCCCAGCTCCTGAGAGCACTGGGCCCAGTGGACATAGCCCTCACCATCATCTTGACCTTTCTTAC
CACTGGCTCAGTTGCCATTTTTCTGGAGGATGCTGTTTACCTATACAAGAACACCCTTTGCCCCATCAAG
AAGAGGACTCTGATCTGGAGTAGCTCTGCACCCACGGTGGTATCTGTGTTCTGCTGCTTTGGTCTCTGGA
TTCCTCGCGCCCTCACACTTGTAGAAATGGCCATAACCTCGTTTTATGCCGTATGCTTTTACCTGCTGAT
GATGGTCATGGTGGAAGGCTTTGGTGGGAAGAAAGCAGTACTGAGGACACTGAAGGACACCCCGATGAGG
GTGCACACGGGTCCCTGTTGCTGCTGCTGTCCCTGCTGCCCACCTCTCATACTTACCAGAAAGAAGCTGC
AGCTGCTCCTGCTGGGCCCTTTCCAGTACGCCTTCTTCAAGATAACGCTGAGCATAGTGGGCCTGTTCCT
CATCCCTGACGGCATCTATGACCCAGGAGAAATTTCTGAGAAGAGCGCAGCTCTCTGGATCAACAATCTC
CTTGCTGTGTCTACCCTTCTGGCCCTCTGGTCCCTGGCCATCCTTTTCCGTCAAGCCAAGATGCATCTGG
GTGAACAGAACATGGGATCCAAGTTTGCTCTGTTCCAGGTGCTTGTCATCCTGACCGCCCTGCAGCCTGC
CATTTTCTCCATCTTGGCTAACAGTGGGCAGATCGCTTGCTCACCTCCCTACTCTTCTAAAATCAGGTCT
CAAGTGATGAACTGCCACATGCTCATACTGGAGACCTTCCTGATGACAGTGCTGACACGAATGTACTATC
GAAGGAAAGACGACAAGGTTGGGTATGAGGCTTGTTCGCTGCCAGACCTGGACTCAGCACTCAAAGCCTG
AGGAGAGTGGCTTGGACCCTGGAAGACATACTGTACTCCTCAGAAGAGCAGGAATTCTCTTCTGTCCCTC
AGCCTTATCAGTGGTTAAGGCTCCCCCTGGCAGAGCAGGCTGGCAGCTTCCATGTGACTATAGGGATGAA
GGTAAAGTGCAGTGGGTTGAACCTGTTTTGAGTCTTTCTCGTTTTTGTAATAAATGGTGAAAGCTGAAAA
AAAAAAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:5064489 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:5064489 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:17228 same embryo
 EMAGE:17230 same embryo
 EMAGE:17227 same embryo
 EMAGE:17229 same embryo
 EurExpress:euxassay_008877 same experiment
 MGI:4826998 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS