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EMAGE:17426

Aldh3b1 aldehyde dehydrogenase 3 family, member B1 ( MGI:1914939)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:17426
euxassay_003862_01

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:17426Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
17426_wholemount_moderate.wlz
17426_wholemount_weak.wlz
17426_wholemount_possible.wlz
17426_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:17426_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T7760
Entity Detected:Aldh3b1, aldehyde dehydrogenase 3 family, member B1 ( MGI:1914939)
Sequence:sense strand is shown

>T7760
TGCAGCTTGGCGAAGCCGCAGGATGGACTCGTTTGAAGACAAGCTTCAGCAGCTGCGGGAGGCCTTCAAG
GAGGGGCGGACGAGGTCAGCTGAGTTCCGAGCGGCACAGCTGCAAGGCCTGAGCCACTTCCTCCGAGACA
ACAAACAACAGCTGCAGGAGGCGTTGGCCCAAGACCTGCACAAGTCAGCCTTCGAGGCCGAGGTGTCTGA
GATTGCCATCAGTCAGGCCGAGGTGGACCTGGCCCTCAGGAACCTGCGGTCTTGGATGAAGGATGAGAAA
GTGTCCAAGAATCTGGCTACACAGCTGGACTCAGCCTTCATCCGGAAGGAGCCCTTCGGTCTGGTGCTTA
TCATCGTGCCCTGGAATTATCCCATTAACCTGACACTCGTGCCGCTGGTGGGGGCCATAGCTGCAGGGAA
TTGTGTGGTGCTCAAGCCCTCAGAGATCAGCAAGGCCACTGAAAAGATACTGGCTGAGGTCCTGCCCCGC
TATCTGGACCAGAGCTGCTTTACTGTGGTACTGGGTGGGCGTCAGGAGACCGGGCAGCTGCTGGAACACA
AGTTCGACTACATCTTCTTCACAGGGAATGCTTATGTAGGCAAGATCGTCATGGCTGCTGCTGCCAAACA
CCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAG
ATAGTGGCCAACCGTGTGGCCTGGTTCCGCTACTTTAATGCCGGCCAGACCTGTGTGGCCCCCGATTATA
TCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTACAGAATGCCATCACACGTTTCTATGG
AGACAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGCGACTCCAGGGA
TTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTGCCCCCACAG
TGTTAGTGGACGTGCAGGAGACAGAGCCTGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGT
GACTGTGAGAAGCCTGGATGAAGCCATCGAGTTCATGAACCGGCGGGAGAAGCCACTGGCGCTGTATGCC
TTCTCCAAGAGAAGCCAGGTTATCAAACAGGTGTTGGCCCGGACCAGCAGCGGGGGATTCTGTGGGAATG
ATGGCTTCATGCACATGACCCTGTCCAGCCTTCCTTTTGGAGGAGTGGGAACCAGCGGGATGGGCAGGTA
CCACGGCAAGTTCTCCTTTGACACCTTCTCCAACCAGCGTGCCTGTCTGCTGCGCAGCCCGGGAATGGAG
AAAATCAATGACTTGCGCTACCCACCCTACTCCAGTCGCAACCTCAGGGTGTTGTTGGTGGCCATGGAGG
AGAGGTGCTGCAGCTGCACCCTGCTGTAAGCAGGGGTTTTGGGGTACAGGAGCCTGCCTGGGGCACAGCT
TCAGAGAAGTGGCCTGCCAGGGCCAAGGCCACAGAGCAGTCTGCTCAGCCCTTCTTGGTGGAGCCCTCTG
CCTCCTGGGGCTCCCCTTTTTGGACCTTTGAATAAGATAGGCTGAGGGTAGGAAGGCAGGAAGGGATGCA
GTGACCATAGAATCTTCGAGAAAACAGAGCACTTCTGAACTACCCACCCTCTCGTGGATAGTGTTGCAAG
GGAGCAGTGATAATCGGCACAGGTCATACTCTGTGACCAGGCCTGTCTGGGTCTTCTCACTCTCAGTTTT
CTATCTGCACAATGGAAATAAAACAGCCTTAACAAAACAGCCTATCGTCGTGGAAGTATTAAACTAGGAG
GGCTGACTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:6312211 using vector (pCMV-SPORT6.1) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:6312211 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:17424 same embryo
 EMAGE:17423 same embryo
 EMAGE:17427 same embryo
 EMAGE:17422 same embryo
 EMAGE:17425 same embryo
 EurExpress:euxassay_003862 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS