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EMAGE:17526

Cdc42se1 CDC42 small effector 1 ( MGI:1889510)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:17526 EMAGE:17526 EMAGE:17526 EMAGE:17526 EMAGE:17526
"Pseudo-wholemount" of euxassay_005842. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_005842_01 euxassay_005842_02 euxassay_005842_03 euxassay_005842_04
EMAGE:17526 EMAGE:17526 EMAGE:17526 EMAGE:17526 EMAGE:17526
euxassay_005842_05 euxassay_005842_06 euxassay_005842_07 euxassay_005842_08 euxassay_005842_09
EMAGE:17526 EMAGE:17526 EMAGE:17526 EMAGE:17526 EMAGE:17526
euxassay_005842_10 euxassay_005842_11 euxassay_005842_12 euxassay_005842_13 euxassay_005842_14
EMAGE:17526 EMAGE:17526 EMAGE:17526 EMAGE:17526 EMAGE:17526
euxassay_005842_15 euxassay_005842_16 euxassay_005842_17 euxassay_005842_18 euxassay_005842_19
EMAGE:17526 EMAGE:17526 EMAGE:17526 EMAGE:17526 EMAGE:17526
euxassay_005842_20 euxassay_005842_21 euxassay_005842_22 euxassay_005842_23 euxassay_005842_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:17526Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
17526_wholemount_strong.wlz
17526_wholemount_moderate.wlz
17526_wholemount_weak.wlz
17526_wholemount_possible.wlz
17526_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:17526_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T9773
Entity Detected:Cdc42se1, CDC42 small effector 1 ( MGI:1889510)
Sequence:sense strand is shown

>T9773
GGCGGGCGGCGCAAGCCACGGAGAGGCAGGGAAGCGGCGACTGCAGCGTGGGGCCGGGTGGAAGGATTCC
ACATCTAAAGAAGACAGGACCTTGTGCCTGCCTGCCCAAGCCTCTTGCCAGTGCCCCACCAGTCAGAGAC
TCCGACCTTCACCGAAAGGCCACTTGTTGGTGTCTAGGATTTCTACCTTTTCCCACCCCATCCGGTTGAC
TGAACCCAGGGTGTTGTTACACCTGCCTGTGAGGACTGGTTGGTTAGCAACAAACACGAGCCCCCTGGGG
CCTCTGGCAGCGGCCTGAAGCTGGAACCATCAGGGAACATGAGCGAGTTTTGGCACAAACTGGGCTGCTG
CGTGGTCGAGAAGCCCCAGCCGAAGAAAAAGAGAAGACGGATTGACCGCACTATGATTGGGGAGCCAATG
AACTTTGTCCACCTGACTCACATCGGCTCTGGGGAGATGGGGGCTGGAGATGGACTTGCCATGACAGGTG
CAGTTCAGGAGCAGATGAGATCCAAGGGAAACCACCGTGACAGACCGTGGAGCAATTCTAGGGCCTTGTA
GCTCCCATGGGACTGGTTCTGCAGTCTTGGAGTTCCCATTCTGTGATTCTGTGTCCAGCCCAAAAGAAAT
GCCACCACCAGATCCCTTCAACCAGTGACCCAAGGGCCCCCCCTCTTTCTCTCTAACAAGTGCCTCAAAA
GGAGTGGGGGCTGGTCTCCCTTTTCTCCCTCTGGCCTCTGCCCCTCCTGGAGATGGGGGTCAAGGCAGCA
GGACTGACCAAGTGACTACTGGTGGGCCAGAGGAGCTCCGCTGAAGCCCTGCACACCCTTGATCTGAGCT
GGGGGTTCTCTGGGAACCTGGAATGGGTTCCTTGCTCCTGAATGAAGGTCGGGTGCTACCTGTAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:6743495 using vector (pDNR-LIB) specific primers. Forward Primer - name:M13 forward (-21), sequence:TGTAAAACGACGGCCAGT; Reverse Primer - name:T3-pDNR-LIB rv, sequence:CAAATTAACCCTCACTAAAGGGTGTTCACTTACCTACTGGGC. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:6743495 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:17525 same embryo
 EMAGE:17527 same embryo
 EMAGE:17528 same embryo
 EMAGE:17523 same embryo
 EMAGE:17524 same embryo
 EurExpress:euxassay_005842 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS