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EMAGE:17681

Pan2 PAN2 polyA specific ribonuclease subunit homolog (S. cerevisiae) ( MGI:1918984)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:17681
euxassay_006015_01

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:17681Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
17681_wholemount_strong.wlz
17681_wholemount_moderate.wlz
17681_wholemount_weak.wlz
17681_wholemount_possible.wlz
17681_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:17681_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T9544
Entity Detected:Pan2, PAN2 polyA specific ribonuclease subunit homolog (S. cerevisiae) ( MGI:1918984)
Sequence:sense strand is shown

>T9544
AGGCGGGGGAGTAGTAGGGAAACTGGAATTTCCCGCGGAGCTGACGGCGCTTTCTCTACCCCCTACTCGT
TTGAATTCCACGCGCTCCAAAATATCCGCCATGGAGAAATCTTGGCCAGAATGTCCATTCTAGGTTCACT
GGTGCTGTCCTCCTGAAGGCTGGGTCACTTGTCTGTAGGAAGCGTGGCAAGGGAGGGTGTGACTCCGGTC
TGACCAGCGGCCACTATCGTCATGAACTTTGAGGGTCTGGATCCTGGACTGGCCGAATTTTCCCCAGCTA
TGCATTCTACCCTGGACCCAGTCCTGGATGCCCACCTGAATCCAAGTTTGCTACAGAATGTGGAGCTAGA
CCCAGAGGGAGTGGCCTTGGAGGCTCTTCCTGTCCAGGAGTCAGTGCACATAATGGAAGGTGTCTACTCT
GAGTTGCACAGCGTGGTGGCTGAAGTGGGAGTGCCTGTGTCTGTCTCCCACTTTGATTTACATGAGGAGA
TGCTGTGGGTGGGGAGCCATGGGGGCCATGCCACCTCCTTCTTCGGCCCAGCTCTGGAGCGCTACTCATC
CTTTCAGGTCAATGGTGGTGACGACATTCGGCAAATCCAGAGCCTGGAGAACGGTATCCTCTTCCTCACC
AAGAACAACCTCAAGTACATGGCCCGTGGAGGGCTCATTATATTTGACTATTTGCTGGATGAAAACGAGG
ATATGCACAGCGTCCTCCTGACAGACAACAGCACTCTGCTCGTTGGGGGGCTGCAGAACCACGTACTGGA
GATTGACCTGAACACTGTCCAGGAGACTCAGAAGTATGCAGTCGAGACACCCGGAGTCACCATCATGAGA
CAGACAAATCGTTTCTTCTTCTGTGGCCACACATCTGGCAAGGTTTCCCTGCGAGACCTCCGTAGTTTTA
AAGTGGAGCATGAATTTGATGCCTTCTCAGGGAGTCTGTCAGATTTTGATGTTCATGGCAACCTGCTGGC
TGCCTGCGGCTTCTCCAGTCGCCTTACCGGCCTGGCCTGTGACCGTTTCCTCAAAGTGTACGATCTGCGC
ATGATGCGTGCCATCACACCTCTTCAAGTGCACGTGGATCCGGCCTTCTTACGATTCATCCCCACATACA
CTTCCCGCCTTGCTATCATCTCCCAGTCAGGTCAATGCCAGTTTTGTGAACCCACAGGCCTGGCCAACCC
AGCCGACATTTTCCATGTGAATCCCGTGGGACCTTTGCTAATGACGTTTGATGTGTCAGCCAGCAAGCAG
GCCCTGGCCTTTGGGGATTCTGAGGGCTGCGTGCATCTCTGGACTGATTCCCCTGAGCCGTCCTTCAACC
CCTACTCCCGAGAGACTGAGTTTGCCCTGCCCTGTCTTGTGGACTCCTTGCCGCCTCTGGACTGGAGCCA
GGATCTGCTGCCGCTTTCCCTCATTCCCGTCCCACTTACCACTGATGCACTGCTCTCTGACTGGCCTGCT
GCCAACTCTGCTCCCGCTCCCAGGCGAGCACCACCTGTGGATGCAGAAATTCTTCGAACCATGAAGAAAG
TGGGCTTCATTGGCTATGCTCCCAACCCTCGCACCAGGCTGCGCAACCAGATTCCCTATCGACTAAAGGA
GTCAGACCATGAATTTGACAACTTCAGCCAAGTCACGGAGTCACCGACAGGGCGAGAAGAGGAGCCTCTC
CACACAGTTTCTAAGAAATACCGGAAGGTAACCATCAAATATTCCAAGCTAGGCCTGGAAGACTTTGACT
TCAAACACTACAATAAGACTCTGTTTGCTGGGTTAGAGCCTCACATCCCCAATGCCTACTGTAACTGCAT
GATCCAGGTGCTCTATTTCTTGGAGCCTGTTCGCTGTCTGATCCAGAACCACCTTTGCCAAAAGGAGTTC
TGCCTAGCGTGCGAGCTCGGCTTCCTCTTCCACATGCTAGACCTCTCTCGTGGCGATCCTTGTCAGGGCA
GTAATTTCCTCCGAGCTTTCCGGACCATCCCTGAGGCCTCAGCTCTGGGTCTCATCCTTGCTGACTCAGA
TGAGGCTTCAGGCAAGGGCAGTCTGGCCCGGCTCATCCAGAGGTGGAACCGCTTCATCCTCACTCAGCTA
CATCAGGATATGCAGGAGCTGGAAGTGCCCCAGGCTTATCGAGGTGCTGGAGGCAGTTTCTGCTCATCAG
GAGACTCCATCATTGGGCAGCTGTTCAGTTGTGAGATGGAGAACTGCAGTCTTTGCCGCTGCGGCAGCGA
GACTGTGCGGGCCTCGTCCACCCTACTCTTCACACTCTCCTACCCTGAGGATAAAACCGGGAAGAACTAT
GACTTTGCTCAGGTGCTGAAGCGAAGTATCTGCCTGGAGCAGAACACACAGGCCTGGTGTGACAACTGTG
AGAAGTACCAGCCCACAATTCAGACCAGAAACATCCGACATCTGCCAGATATTCTTGTCATTAACTGTGA
AGTGAATAGCTCAAAAGAGGCTGATTTCTGGAGACTGCAAGCTGAGGTTGCCTTCAAAATAGCGGTGAAA
AAGTACGGCGGGGAAATGAAGAGCAAAGAGTTTGCTTTAGCTGATCGGAAGGAACTGAGGAGTCCAGAGG
GCTTTCTGTGTTCCTCCATCGAGGAGCTGAAGAATGTCTGGCTTCCATTTTCCATCCGCATGAAGATGAC
CAAGAACAAAGGACTGGATGTTTGCAACTGGGCTGACGAGCATGAGCTTAGCAGCCTGGGTGCCCCCTCA
CAGTGGGGTCCGGCCAGGGCAGAGGAGGAGCTTGGTGTCTATGTATATGACCTGATGGCTACTGTGGTAC
ACATCCTGGACTCACGAACAGGCGGCAGCTTGGTGGCTCACATCAAAGTCGGTGAGACCTACCACCAGCG
CAAGGAGGGCGTGACTCATCAGCAGTGGTATCTCTTCAATGACTTCCTTATTGAACCTATTGATAAGTAT
GAAGCCGTGCAGTTTGACATGAATTGGAAAGTACCTGCTATCCTGTATTATGTCAAAAGGAATCTCAATT
CCAGATACAATCTGAATATCAAGAACCCCATTGAGGCCAGTGTGCTGCTGGCAGAAGCCTCGCTGGCACG
GAAGCAACGGAAAACACACACGACCTTTATTCCATTGATGCTGAATGAGATGCCACAGGTCGGGGACCTG
GTGGGCCTGGATGCCGAGTTTGTCACTCTTAATGAGGAAGAAGCAGAGTTACGCAGTGATGGTACCAAGT
CCACCATTAAGCCAAGCCAGATGTCAGTAGCAAGGATCACCTGTGTTCGGGGCCAAGGGCCTAACGAGGG
CATCCCCTTCATTGATGACTACATCTCCACGCAGGAGCAGGTAGTAGATTACTTGACTCAGTACTCGGGG
ATAAAGCCAGGAGACCTTGATGCCAAAATCTCCTCAAAGCACCTCACAACCCTCAAGTCTACCTACTTAA
AGCTTCGCTTTCTCATTGATATTGGAGTCAAGTTTGTGGGTCATGGTCTGCAGAAGGACTTCCGGGTCAT
CAACCTCATGGTGCCCAAGGACCAAGTTCTTGACACAGTCTACCTGTTCCACATGCCCCGAAAACGAATG
ATTTCCCTACGATTCCTGGCCTGGTATTTTCTAGACCTGAAGATTCAAGGTGAGACCCATGACAGCATTG
AGGATGCCCGCACAGCCCTTCAACTCTACCGGAAGTATCTGGAGCTGAGCAAGAACGGCACCGAGCCCGA
GTCCTTCCACAAGGTGCTCAAGGGTCTCTATGAGAAGGGCCGAAAGATGGACTGGAAGGTGCCTGAGCCT
GAAAGCCAGACAAGTCCCAAGAATGCAGCTGTCTTCTCAGTGCTGGCACTGTGAGCTGCCTTCCCTTTCA
GTGCTGTCCCCAGAACTGAGAGGTGGCTTCTCAAGTCGGCTTTACCCTGTCCACTTCCAGAACTGGATCT
GCTCAGGGTCTACAGATGGTGCTATTAATAGAACTGGAAAGCAGCAAAATTGTTGCAAAGGTTCTAGCTG
CCAGATTCCCCCTTTATCCTCTGCAAAACAGTGGGCCAGAAACAAAGCCTAAAGTGACCCAGGTGGAGTG
ATTGGTGTTCGTAATAAATATCCTGGGCAACTGATATCTGTACAAAAGAGCTCTAGAACCAGAACTCTCA
GTTCCCAGTCTGCTAGAGAACTGAAGTCCTGGACAGTCACAGGGTACAGAGACCCAGGCAGCTCCAGCAT
CTAGCTGCTTGAGAGACGGTGGCTGGGTGGACCAGCTTGTAGAGTCTCAATGGGCCAATCAAACCGGTGT
GCAGGAAGCTGAGCTACTGGCTTCATTCCTGACCACAGCTGAGAAGTATCTGTCTTCCATACATTCTATC
TCGAGTTTTGTTTTATTTTTTAAAAATTTTGCTTAAAACAGCATGTTTTATAAAATAAAAGTATTTTTAT
CTCATTAGAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:30615204 using vector (pYX-Asc) specific primers. Forward Primer - name:RZPD T3, sequence:ATTAACCCTCACTAAAGGGA; Reverse Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:30615204 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:17680 same embryo
 EMAGE:17677 same embryo
 EMAGE:17676 same embryo
 EMAGE:17679 same embryo
 EMAGE:17678 same embryo
 EurExpress:euxassay_006015 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS