EMAGE mouse gene expression spatial database

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EMAGE:19290

Tfpi2 tissue factor pathway inhibitor 2 ( MGI:108543)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_001973. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_001973_01	euxassay_001973_02	euxassay_001973_03	euxassay_001973_04

euxassay_001973_05	euxassay_001973_06	euxassay_001973_07	euxassay_001973_08	euxassay_001973_09

euxassay_001973_10	euxassay_001973_11	euxassay_001973_12	euxassay_001973_13	euxassay_001973_14

euxassay_001973_15	euxassay_001973_16	euxassay_001973_17	euxassay_001973_18	euxassay_001973_19

euxassay_001973_20	euxassay_001973_21	euxassay_001973_22	euxassay_001973_23	euxassay_001973_24

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

19290_wholemount_strong.wlz

19290_wholemount_moderate.wlz

19290_wholemount_weak.wlz

19290_wholemount_possible.wlz

19290_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:19290_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Annotation Validation:

spatial mapping by EMAGE editor

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T717
Entity Detected:	Tfpi2, tissue factor pathway inhibitor 2 ( MGI:108543)
Sequence:	sense strand is shown >T717 TCCTCGAGNCTGTTGGCCTACTGGGCTTAGCTGCCATCTTTTCTCCTGCTGCTATCACAGGGAATAATTT AGAGATCTGCCTCTTGCCCTTGGACGCAGGACCTTGTCAGGCCCTCATCCCCAAGTTCTACTATGGCAGA GACCAGCAAAAGTGCCGCAGATTCAACTATGGAGGCTGCTTGGGCAATGCCAACAATTTCCACAGTCGGG ACCTCTGCCAACAGACTTGCGGAAGTATCGAGAAAGTTCCTCCAGTTTGTCGATCAGAGCTAAAAACATA TCCATGTGATAAGCCCAATATACGGTTTTTCTTCAACCTGAATACCATGACATGTGAGCCCCTTAGGCCT GGTCTGTGTAGCAGGACTATAAATGTATTCTCTGAGGAAGCTACATGTAAGGGCTTGTGTGAACCACGGA AACATATTCCATCATTTTGCTCCAGTCCAAAGGATGAAGGTCTGTGTTCTGCCAATGTGACACGCTTTTA TTTTAATTCAAGAAACAAAACATGTGAGACTTTCACCTATACTGGCTGTGGTGGGAATGAGAAT
Notes:	The probe template was PCR amplified from IMAGE:1890036 using vector specific primers. Forward Primer - name:T7-pME18S-FL3-fw, sequence:CGTAATACGACTCACTATAGGGCCTTCTGCTCTAAAAGCTGCG; Reverse Primer - name:T3-pME18S-FL3-rv, sequence:CAAATTAACCCTCACTAAAGGGCGACCTGCAGCTCGAGCAC. Anti-sense probe was then transcribed from the PCR amplified template using T3 polymerase. EMAGE Editor's Note: the partial probe sequence indicated here was given by the EURExpress Consortium and has been checked using BLAST comparison against all available partial insert sequences of IMAGE:1890036 from NCBI. In cases where no BLAST hit was found (because the two sequence reads are found at opposing ends of the insert sequence), both end sequences were then checked against the appropriate cDNA RefSeq to ensure validity of the information.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:19293 same embryo
	EMAGE:19294 same embryo
	EMAGE:19292 same embryo
	EMAGE:19291 same embryo
	EurExpress:euxassay_001973 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source