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EMAGE:19328

Rep15 RAB15 effector protein ( MGI:1913782)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:19328 EMAGE:19328 EMAGE:19328 EMAGE:19328 EMAGE:19328
"Pseudo-wholemount" of euxassay_002041. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_002041_01 euxassay_002041_02 euxassay_002041_03 euxassay_002041_04
EMAGE:19328 EMAGE:19328 EMAGE:19328 EMAGE:19328 EMAGE:19328
euxassay_002041_05 euxassay_002041_06 euxassay_002041_07 euxassay_002041_08 euxassay_002041_09
EMAGE:19328 EMAGE:19328 EMAGE:19328 EMAGE:19328 EMAGE:19328
euxassay_002041_10 euxassay_002041_11 euxassay_002041_12 euxassay_002041_13 euxassay_002041_14
EMAGE:19328 EMAGE:19328 EMAGE:19328 EMAGE:19328 EMAGE:19328
euxassay_002041_15 euxassay_002041_16 euxassay_002041_17 euxassay_002041_18 euxassay_002041_19
EMAGE:19328 EMAGE:19328
euxassay_002041_20 euxassay_002041_21

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:19328Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
19328_wholemount_strong.wlz
19328_wholemount_moderate.wlz
19328_wholemount_weak.wlz
19328_wholemount_possible.wlz
19328_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:19328_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T4603
Entity Detected:Rep15, RAB15 effector protein ( MGI:1913782)
Sequence:sense strand is shown

>T4603
GAAAATTTATGAGAAAGGCAGTTCCCGGTGACATTCACATGCTGGATAGCTAGAAGCAGCATTTACTGGG
TGTGAGAAAATGGGACAAAAGGCTTCACAGCAGGTAGCTCCGAAGGACAGCCAGGAGGTTCTTGCCATGT
GTGAGGTGGTCAGTGCGGCTATTTCCCACGCAGCACAGAAGCTGAAGGAGTACCTCGGGTTTGAGTATCC
GCTGAGCAGACTCTGCCTTGCAGCGAGTTCACTGACTGAGGTCTTCCTCGTCCACTTCGTTACCTTCTGC
CAGGAAAGGGGAGCGGATGAGTGGCTCACCACCACCAAGATGACCAAGCACCAGGCCTGGCTGTTTGGAG
CAGACTGGATTTGGACCTTCTGGGGACCTGATAAGGAAATACGGCTTCAGGTGGCAGTGCAGACTCTGAG
GATGGCTTCGCTCCCTCTGACGGACCCAAAATCCTGTGAGTCAAGGGGAGAGGAGTCTTGGAAAAAAGGC
AGATTTGACAAGCTGCAAGAGTTCTGTAACTTGGTAGGAGAGGACTGTCTGGGTCTGTTTATCATCTTCG
GTGTGCCTGGAGAACCTAAGGCTATCAGAGGCGTTGTCCTGGAGAGTGTCAGAAACGGGATGATGGAGAG
CCAGCTGCCAGGACGCAAGGCTGTGGAGCAGTTTGTGCTGGAAACAAAGGACTGTGTCTCCATCAAAGAG
CTGCTAGGGAACTGTCTGAGTAAAAGAGATGGGCTGAGTGACATGGGCAGAGTTTACATCCGCATCCTCT
AAACTGGGCATGTTGCTGTGACTGGCCTGTGAGACAGAACAGGAGGACAATCCCCAACACAGGGCTATCC
ACCCCCTACATTGACTGAAAGTGATCCCTGGGTTAAAACTTGCTAGTGTCCCAGTTACGGAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:4988964 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:4988964 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:19329 same embryo
 EMAGE:19330 same embryo
 EMAGE:19325 same embryo
 EMAGE:19327 same embryo
 EMAGE:19326 same embryo
 EurExpress:euxassay_002041 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS