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EMAGE:19401

Ccdc115 coiled-coil domain containing 115 ( MGI:1916918)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:19401 EMAGE:19401 EMAGE:19401 EMAGE:19401 EMAGE:19401
"Pseudo-wholemount" of euxassay_004842. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_004842_01 euxassay_004842_02 euxassay_004842_03 euxassay_004842_04
EMAGE:19401 EMAGE:19401 EMAGE:19401 EMAGE:19401 EMAGE:19401
euxassay_004842_05 euxassay_004842_06 euxassay_004842_07 euxassay_004842_08 euxassay_004842_09
EMAGE:19401 EMAGE:19401 EMAGE:19401 EMAGE:19401 EMAGE:19401
euxassay_004842_10 euxassay_004842_11 euxassay_004842_12 euxassay_004842_13 euxassay_004842_14
EMAGE:19401 EMAGE:19401 EMAGE:19401 EMAGE:19401 EMAGE:19401
euxassay_004842_15 euxassay_004842_16 euxassay_004842_17 euxassay_004842_18 euxassay_004842_19
EMAGE:19401 EMAGE:19401 EMAGE:19401
euxassay_004842_20 euxassay_004842_21 euxassay_004842_22

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:19401Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
19401_wholemount_strong.wlz
19401_wholemount_moderate.wlz
19401_wholemount_weak.wlz
19401_wholemount_possible.wlz
19401_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:19401_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T6079
Entity Detected:Ccdc115, coiled-coil domain containing 115 ( MGI:1916918)
Sequence:sense strand is shown

>T6079
GCTTCACCGGTGCTTGAGCTGGTCAGGCAGCGGGCTAGCGAAGAGTAAAAGCAGGAACTGTGCGCATGGC
TTCCTAGATTCAAGTTAAGGTCCGACTTTTGGTAGCCATCGGATTCGAGAAGTATCCCGCTCCAGGCGCT
AATCCGCGTCCTGGCTGGTGACAGGGATCACCCGGAAGTTGAAACCTTTGACTTCCGGGTCACGATTAGT
ACTGCCCCCCCCAAGGGCGGATCTTGAGCGCTTATTGGCTGTCATGCACATGGCCTCGCAGTGATTCGGC
GGCTTGGAAGGAAGTGGCTCCGCCCATCCGCGCGAGTCCCAAGACTGGCTGGGCCATGGCGGTCCAGGCT
CTGCGAGAGGAGTTGGACTCCAAGTGCCTACAGCTGCTCAGTGACCTGGAGGAACTGGAGGCGAAGCGGG
CGGCGCTGAACGCCAGGGTGGAGGAGGGTTGGCTCTCACTTGCCAAGGCTCGCTATGCCATGGGAGCCAA
GTCGGTAGGACCCCTGCAGTATGCCTCGCGTATGGAGCCTCAGGTCTGCGTGCGTGCCAGCGAGGCCCAG
GATGGACCCCAGACCTTCAGGGTGATCAAAGCTGACGCCCAGACCCCCGAGGAAGTGGGGCCTAGCGAAG
CATCTCTGCGCAGGCGCAAGGGCCCCACCAAGACCAAAGAGTTAGGATCTGCTGTAGTTCCTCAAGATCC
CTTGAACTGGTTTGGAATTTTGGTTCCTCACAGTCTGCGGCAGGCCCAAGCCAGCTTCCGGGATGGCCTA
CAGCTGGCTGCAGATATAGCCAGTCTCCAGACTCGCATCAACTGGGGTCAGAGTCAGCTTCGAGGCCTCC
AGAAAAAACTGAAGGAGTTGGACCCTGGGCCTGCCTGACCTGCATCCACATTGGGAGGCACTGAGCATAG
CTGCCGTGGATGCTACCACCTTACCTCAGGCCTTCTTCTTTTTATAAGCAGCCCCTGTCTCAGCTGATGC
CCCACCTATAAATGTCCTTAGTCTGCGCGGTTTCTAGCTTTTCGAGGCATGAAGTTGAGTTATGAAGTTT
GATGAAGCAAAGCTGAGCAGTGTAGAGAGCACCTAGTTCTAGGCCATGGTCTCAGGGCATGACAGTGACG
TGTGAATAACCTGCGGCAGCCAGCTGGGATAGTGAAGCCCTGCAGAAATGGTGACAGAGAAGAAAGGGAG
TCTAGAAACATAAGGTAGATCAGGACAATTCCAGTCAATAAAAGTACCTCAGGCTGGGTGTGGCAGCGCG
TGCCTGTAGCTCCAGCAACTCTAGAGGCTGAGGCAGGAGGATCACTTAAGCCCTGGGAAGTTTATAAACA
AGACAGCACACACACACACACACACAAATACCAGAATAGCTAGCAGGAAATATTACTTCTGTTATAAAAG
GAAAAATAACTGTCATTCTTCCGGGGAATCAGGGTGACCTTCCTGATTGCACTTAGCTTATAGAGTGAGA
CCCAGCTGCTTTGCTGAAGGTGCATTCTCTCACCTGGAAACTGTGTCTTGCTTCACGTTTTTTTCCTGAG
CTATCCAATTGTGTTGGGAAGGGGAATGTAATTGTTTGTGGGGTGTAAATATTTCTTCCTAAGTTGTTAA
TTTTGCTTATATTAGTTTTTCTACTTATGAATTGTAAAAACAGAAATTTGTACAGAAAAATTGAATAAAG
TAAAAGCTACAGTAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:3491825 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:3491825 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:19402 same embryo
 EMAGE:19405 same embryo
 EMAGE:19404 same embryo
 EMAGE:19403 same embryo
 EMAGE:19406 same embryo
 EurExpress:euxassay_004842 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS