EMAGE mouse gene expression spatial database

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EMAGE:19407

Cenpq centromere protein Q ( MGI:1933744)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_004788. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_004788_01	euxassay_004788_02	euxassay_004788_03	euxassay_004788_04

euxassay_004788_05	euxassay_004788_06	euxassay_004788_07	euxassay_004788_08	euxassay_004788_09

euxassay_004788_10	euxassay_004788_11	euxassay_004788_12	euxassay_004788_13	euxassay_004788_14

euxassay_004788_15	euxassay_004788_16	euxassay_004788_17	euxassay_004788_18	euxassay_004788_19

euxassay_004788_20	euxassay_004788_21	euxassay_004788_22

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

19407_wholemount_strong.wlz

19407_wholemount_moderate.wlz

19407_wholemount_weak.wlz

19407_wholemount_possible.wlz

19407_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:19407_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

embryo

strong

ubiquitous

strong expression: see section 01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22

Annotation Validation:

spatial mapping by EMAGE editor, text annotation by author

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T6486
Entity Detected:	Cenpq, centromere protein Q ( MGI:1933744)
Sequence:	sense strand is shown >T6486 CAGAAGCGCGCCTTTTAAATCCGTGAAGCAACAGTGAAGAGTCGAGGAAGCGATAAAGCGGCTGACAGAT CCAGGGGATAATTTGAGCCTCACGCGTTTGTGACTATGTATCGTTGTGATTATACTGTTTAGATGGAAAT AGCTGGTAAAGCACGTGCTTCTAGGAAAAAACCTCAACAGGTGAAAAGAAGTTTGAAACAAAGAGCCAAT AAGGAAGCGGATTTGCCAGAGAATGAGGTTGGAAACACAGCAAAAAGAAACAGAAGTCATGCAAAGCATC TGTCCTCTAAAGTAACAGGACAAGCAACGTATGTTCATCTAAAACGGGTAAAAATATCATCCAGCAAGAG AACAACCTGGCAACCTCTTCCAAAGGATACTGAAGAGTATTTGCAAAGTATGATGGAGTCAGTCATTCTT GGAATTTTATTCAACATAAAAAGAAAAGAACAAATTCAGTGTCATCTCAACCAGTTGAAGAAAAGACTAC TACAACAATGTGCAACACTGAAAGTCCCTCCAAGAAAGTTGAACTATTTAAAGGATGTGTCAAAAATGCT GAAAATGGAAAAGGCACAGGAAAGAGCAAATGAAGAGAGCCTGGCTTCACTGCAGGAAGAAATAGACAAA ATAGTAGAGACCACAGAGTCAATGACTGAGAGTATTCAAAGCCTAAAGAATAAAATTCAAATTTTGACAA GTGAAGTAGAAGAAGAGGAACAGGAGGTGAAACAGGTATTTCACATAGATAGCAATAAAGTACTTGCTCT TCCAGAACTTTCTCAGAAAAGTCTTAAAGCACCCATACTTCAAGAAGAAATTTTGGCACTAATTCCAAAC CAGAATGCTCTTCTGAAGGACTTGGATGTTCTTCATGATTCAGCCCCAGTGAAGAATGTGTCAGCATTCA TTGAAGAAGCCTATAAGAAACTTGACTCCTAAAGAGTTGGATTTTGTTTTGGTGTTTAAGCCGTGTTCCA TATTAACTTATTGTTGATAAATTGTAAAACTCTTTTTTCTTTTAATAATAGTCTCTCACTCTGTTTGTAG CCTAGGCTGGCTCAGCACTTACTCTTTCTCCCATTTGGCCTTGAACTCCCAGCAATCCTGCCTCAGCATC CTGAGTGCTGGGATTACCGGGGCGAGCTTCACATCTGGCCCAAAAGGTGTGCAATTTAACTGGAGATCTT TCTTCAAAACAATTAACCTTTGTTATCTACCTTAAAACTAGCCTGTGTGGGCTTATCATTAATATCTAAT GTCCTAAAAACATTACAGTTGCTAAATCTAGGAAATGTATATATATGTAGATATTTGCTAAAACTGTTTA CTGAGAATTATTTTTAAAAATAAAAAAAAAATGCCATGATGTAAAAAAAAAAAAAAA
Notes:	The probe template was PCR amplified from IMAGE:3588374 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:3588374 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:19411 same embryo
	EMAGE:19408 same embryo
	EMAGE:19409 same embryo
	EMAGE:19410 same embryo
	EMAGE:19412 same embryo
	EurExpress:euxassay_004788 same experiment
	MGI:4823810 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source