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EMAGE:19412

Ctsz cathepsin Z ( MGI:1891190)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:19412
euxassay_006082_01

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:19412Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
19412_wholemount_strong.wlz
19412_wholemount_moderate.wlz
19412_wholemount_weak.wlz
19412_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:19412_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T6484
Entity Detected:Ctsz, cathepsin Z ( MGI:1891190)
Sequence:sense strand is shown

>T6484
GCGGGGCGTCCCGAGCGCGTGGGCCTGCGGGTCGGGTCAAGAGGTCGAAGGTGCTGCGCGTGATCCAGGA
TCCGAATTGGCCCGGAGCAGGAGCATGGCGTCGTCGGGGTCGGTGCAGCAGCTGCCCCTGGTGCTGCTGA
TGTTGCTGTTGGCGAGTGCGGCACGGGCCAGACTCTACTTCCGCTCGGGCCAGACTTGCTACCATCCCAT
TCGCGGGGACCAGCTGGCTCTGCTGGGGCGCAGGACTTATCCTCGGCCACATGAGTACCTGTCCCCAGCG
GATCTCCCTAAGAATTGGGACTGGAGAAATGTGAACGGTGTCAACTATGCCAGCGTCACCAGGAACCAGC
ACATCCCACAGTACTGTGGTTCCTGCTGGGCCCACGGCAGCACCAGTGCCATGGCAGACCGAATCAACAT
CAAGAGGAAAGGTGCATGGCCCTCCATCCTGCTGTCCGTACAGAATGTCATTGACTGTGGCAATGCTGGC
TCTTGTGAAGGGGGCAATGACCTTCCGGTGTGGGAGTATGCCCACAAGCATGGCATCCCCGATGAGACCT
GCAACAACTACCAGGCCAAGGACCAAGACTGTGACAAGTTTAACCAGTGTGGGACCTGCACTGAATTCAA
AGAGTGTCACACCATCCAGAATTACACCCTCTGGAGAGTGGGTGATTACGGTTCCCTGTCCGGGAGGGAG
AAGATGATGGCCGAGATCTATGCCAATGGTCCCATCAGCTGCGGGATAATGGCAACAGAGATGATGTCTA
ACTACACTGGAGGCATCTATGCTGAGCACCAGGACCAGGCTGTTATCAACCACATCATCTCTGTAGCTGG
CTGGGGTGTCAGCAACGATGGCATCGAGTACTGGATTGTCCGAAATTCATGGGGCGAACCCTGGGGTGAG
AAAGGCTGGATGAGGATCGTGACCAGCACCTACAAGGGAGGCACAGGTGACAGCTACAACCTTGCCATCG
AGAGTGCCTGCACATTTGGGGACCCCATTGTTTAGGTAGATGTCTCTGGAAGCAGCGCTGTGAACCATGA
CAGGGAGGGGTGATTAATTACTGACACTGGACATGTCCAGACAGCTATAAACAGTGCTTGTGGACATGAG
GACCAGAGTGTGGACTGCATCCCGAGAGGAGACGGTAAAGGATGAAACACAACTGCACTGGGACCCTCCA
CCGTACCCTCCAGGCCTGCCTCCTCCACCACTGAGCCCTCCAGGCCTGCCTCCTCTTCTACAGTGCTTGC
CTTCAGCCACCCGGAGAAGAGAGCTATGGTTTAGGACAGCTCAACTTATCACCAGATCTGGAGCCCTGGA
ATCCATGGGAGGGGGGAACAAGTCCAGACTGCCTAAGAAATGAGTAAAATATCTGGCTTCCCAAAAAAAA
AAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:3588457 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:3588457 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:19407 same embryo
 EMAGE:19411 same embryo
 EMAGE:19408 same embryo
 EMAGE:19409 same embryo
 EMAGE:19410 same embryo
 EurExpress:euxassay_006082 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS