EMAGE mouse gene expression spatial database

Quicksearch Help

(Click the icon to keep this page displayed.)

EMAGE:19518

Clip1 CAP-GLY domain containing linker protein 1 ( MGI:1928401)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


euxassay_004931_01	euxassay_004931_02	euxassay_004931_03	euxassay_004931_04	euxassay_004931_05

euxassay_004931_06	euxassay_004931_07	euxassay_004931_08	euxassay_004931_09	euxassay_004931_10

euxassay_004931_11	euxassay_004931_12	euxassay_004931_13	euxassay_004931_14	euxassay_004931_15

euxassay_004931_16	euxassay_004931_17	euxassay_004931_18	euxassay_004931_19	euxassay_004931_20

euxassay_004931_21	euxassay_004931_22	euxassay_004931_23	euxassay_004931_24

View assay images:
Expression pattern clarity:

Expression Pattern Description

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T6557
Entity Detected:	Clip1, CAP-GLY domain containing linker protein 1 ( MGI:1928401)
Sequence:	sense strand is shown >T6557 CGGACGCGTGGGTGGGAGGCAGGTGACGGCGACCAGCGGCGTCCCAGGCGATTTGACCGAGAGGCTGAGT TCTCTATAGGAACACCCACATTTGTATGGATGAGTGGGGAAAGATAGCGGCAGCAGACAAGGAAAAAGCG TCCTGACCTCCCGAGAACATGAGTATGCTAAAACCCAGCGGCCTGAAGGCCCCTACCAAGATCCTTAAGC CGGGAAGCACAGCCTTGAAGACGCCTGCTGCTGCTGCAGCTCCAGTGGAGAAGACAATACCCAGTGAGAA AGCCTCGGGCCCTCCATCCTCCGAGACCCAAGAGGAGTTTGTGGATGACTTTCGAGTTGGAGAACGTGTT TGGGTGAACGGGAATAAGCCCGGATTTATCCAGTTTCTTGGGGAAACTCAGTTCGCACCAGGCCAGTGGG CTGGGATTGTTTTAGATGAACCCATAGGGAAGAACGATGGCTCTGTGGCGGGAGTGCGGTATTTCCAGTG TGAACCTTTAAAGGGCATATTCACCCGACCTTCAAAGCTAACGAGGAAGGTGCAGGCAGAAGATGAAGCC AACGGCCTGCAGGCAGCTCCTGGGAGAACTGCTTCACCTCTGTCCACTGCTGCAGCTACCATGGTGTCTT CTTCTCCAGCCACTCCCTCAAATATTCCCCACAAACCGTCCCAGTCAACGGCAAAAGAACCTTCGGCTAC ACCTCAAATTAGCAACCTCACAAAAACTGCCAGTGAGTCGATCTCCAACCTTTCAGAGGCTGGCTCTGTC AAGAAGGGGGAGCGGGAGCTCAAGGTCGGAGACAGGGTGCTGGTTGGTGGCACTAAGGCTGGCGTAGTCC GCTTTCTTGGCGAGACCGACTTTGCCAAGGGGGAGTGGTGTGGTGTGGAGTTAGACGAGCCTTTGGGGAA GAACGATGGTGCTGTGGCCGGAACAAGGTATTTTCAGTGTCAACCCAAATATGGATTGTTCGCTCCTGTC CACAAAGTGACAAAGATTGGCTTCCCGTCTACTACCCCAGCCAAAGCCAAAGCCGCCGCTGTGAGGCGAG TGATGGCCGCCACGCCCGCCAGCCTGAAGCGAAGCCCTTCTGCCTCCTCCCTCAGCTCCATGAGCTCCGT GGCCTCCTCTGTGAGCAGCAAACCCAGCCGGACAGGACTATTGACTGAAACCTCCTCCCGCTACGCCCGC AAGATCTCGGGCACCACTGCCCTCCAGGAGGCGCTGAAGGAGAAGCAGCAGCACATTGAGCAGCTGCTGG CTGAGCGGGACCTGGAGCGGGCCGAGGTGGCCAAGGCTACCAGCCACGTGGGGGAAATAGAGCAGGAGCT AGCCCTGGCCCGAGATGGGCATGACCAGCATGTCCTGGAACTAGAGGCCAAGATGGACCAGCTACGGACC ATGGTGGAAGCTGCTGACAGGGAGAAAGTGGAGCTGCTCAACCAGCTGGAAGAGGAGAAGAGGAAGGTTG AGGACCTTCAGTTCCGAGTTGAAGAAGAATCAATTACCAAAGGCGATCTTGAGGTGGCTACCGTCTCAGA AAAGTCCCGAATAATGGAACTAGAAAAGGACCTAGCATTGAGAGCACAGGAAGTAGCTGAGCTCCGAAGA AGGCTAGAGTCCAGTAAACCTCCTGGGGATGTGGATATGTCTCTCTCCCTTTTGCAAGAAATAAGTGCTT TGCAAGAAAAGCTAGAAGCCATCCATACTGACCACCAGGGCGAGATGACTTCTTTGAAGGAACACTTCGG AGCTCGAGAGGAGGCGTTTCAGAAGGAGATCAAGGCTCTGCACACGGCCACTGAGAAGCTTTCCAAAGAG AACGAGTCCCTGAGAAGCAAGCTCGACCACGCTAATAAGGAGAACTCCGATGTGATAGCTCTATGGAAGT CCAAACTGGAGACCGCCATAGCATCCCACCAGCAGGCAATGGAGGAGCTGAAGGTGTCCTTTAGCAAAGG CATTGGAACGGACTCCGCTGAATTTGCTGAGTTAAAGACACAGATAGAGAGACTGAGACTAGATTACCAG CACGAAATAGAAAGTTTACAGAGTAAACAGGACTCTGAGCGGTCTGCTCATGCTAAAGAGATGGAGACCA TGCAGGCCAAGCTGATGAAGATCATTAAAGAGAAGGAGGACAGCCTGGAGGCCGTCAAAGCGAGACTGGA CAGTGCAGAAGACCAGCACCTAGTGGAAATGGAGGACACGCTAAACAAACTGCAGGAGGCGGAGATTAAG GTAAAGGAGCTAGAGGTTCTGCAGGCCAAGTACACTGAACAAAGCGAGGTCATTGGTAATTTTACATCGC AGCTCAGTGCTGTCAAAGAAAAGCTCTTGGATCTTGATGCGCTTCGGAAAGCCAATTCCGAAGGTAAACT GGAGCTCGAGACACTTAGACAGCAGCTTGAGGGAGCTGAAAAGCAGATTAAAAACTTAGAGACTGAAAGG AACGCTGAAAGTAGCAAGGCTAATAGCATTACCAAAGAGCTCCAGGAGAAAGAGCTAGTGCTCACTGGTC TGCAGGACAGTTTGAATCAAGTCAATCAAGTGAAGGAGACTTTGGAGAAAGAACTTCAGACTTTGAAAGA AAAGTTTGCCAGTACTTCAGAGGAGGCGGTCTCTGCTCAGACAAGGATGCAAGATACCGTAAATAAACTG CACCAAAAGGAGGAACAGTTTAACGTGTTGTCGTCTGAACTGGAGAAGTTGAGAGAAAATTTAACAGACA TGGAGGCAAAATTTAAAGAGAAGGATGATCGAGAAGATCAGCTGGTAAAGGCAAAGGAAAAATTAGAAAA CGACATTGCAGAAATAATGAAGATGTCAGGAGATAACTCTTCTCAGCTGACAAAGATGAATGATGAATTA CGTCTGAAGGAAAGATCCGTGGAAGAACTCCAGCTCAAGCTTACAAAGGCCAATGAAAACGCCAGTTTTC TGCAGAAGAGTATTGGCGAAGTGACTCTTAAAGCTGAGCAGAGTCAGCAGCAAGCAGCCAGAAAACATGA AGAAGAAAAGAAAGAGTTGGAGGAAAAACTGTTGGAACTGGAAAAGAAGATGGAAACAAGCTACAACCAG TGTCAGGACCTGAAAGCTAAGTATGAAAAAGCCAGTTCTGAGACTAAAACAAAGCATGAAGAAATCCTGC AGAACCTCCAGAAGATGCTGGCGGACACAGAGGATAAGCTGAAGGCTGCTCAGGAGGCGAACAGAGATCT GATGCAGGACATGGAGGAGCTGAAAACACAGGCCGACAAAGCCAAAGCTGCTCAGACTGCAGAAGACGCC ATGCAGATCATGGAACAGATGACCAAAGAGAAAACAGAAACGCTGGCCTCCTTGGAGGACACCAAGCAAA CAAATGCAAGACTACAGAATGAATTGGACACACTTAAGGAAAACAACTTGAAAACTGTGGAAGAGCTGAA CAAGTCAAAAGAACTGCTGAGTGTAGAGAACCAAAAAATGGAAGAATTCAAGAAAGAAATAGAAACCCTA AAGCAGGCAGCAGCTCAGAAGTCCCAGCAGCTTTCAGCACTGCAGGAAGAGAACGTCAAACTTGCCGAGG AGCTGGGGAGAACCCGGGACGAAGTCACAAGTCACCAGAAGCTGGAAGAAGAACGATCTGTACTCAATAA TCAGTTGTTAGAAATGAAAAAGAGAGAATCTGAGTTCAGAAAAGACGCCGATGAAGAGAAAGCCTCCTTG CAGAAGTCGATCAGCCTCACCAGTGCCTTGCTCACAGAGAAGGACGCGGAGCTGGAGAAGCTGAGGAATG AGGTCACAGTGCTCAGGGGAGAGAATGCCACCGCCAAGTCCCTGCACTCAGTTGTGCAGACACTGGAGTC TGATAAGGTGAAGCTTGAGCTCAAGGTCAAAAACTTGGAACTTCAACTCAAGGAGAACAAGAGGCAGCTC AGCAGCTCCTCAGGTAACACTGATGCTCAGGCGGAAGAGGATGAGAGAGCCCAGGAGAGTCAGATTGATT TCCTCAACTCGGTAATAGTGGATCTTCAAAGAAAGAACCAAGACCTCAAGATGAAGGTGGAGATGATGTC TGAAGCTGCACTCAATGGCAACGGGGAAGACCTGAACAGTTATGACAGTGATGACCAGGAAAAGCAGTCC AAGAAGAAACCCCGCCTCTTCTGTGACATCTGTGACTGCTTTGACCTCCACGATACAGAGGACTGTCCCA CCCAGGCACAGATGTCGGAAGATCCTCCCCATTCCACTCACCATGGCAGCCGGAGCGAGGAGCGGCCATA CTGTGAGATCTGTGAGATGTTTGGGCACTGGGCAACCAACTGCAATGACGACGAGACCTTCTGAGGAAGC CGGGAGGGCAGGAAGGGCTTCCCCGACAAACGCCGGCTCCTCAGCAGCTCCCGCCAGCATTGGTGTGCAA CTTCAGAAGAGCTCCTTATTTTTTGACCCCTGTCAACAAATCTGAGAAAATATTTTGATCTTCAACAAGT TTCCCTTTCATTTCCCCTCGTAAGTTAAAATAATAATAAATATTTGGTAGGTGGGCTTGCAAAAAAAAAA AAAAA
Notes:	The probe template was PCR amplified from IMAGE:3592614 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:3592614 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:19521 same embryo
	EMAGE:19520 same embryo
	EMAGE:19519 same embryo
	EMAGE:19517 same embryo
	EurExpress:euxassay_004931 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source