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EMAGE:19576

Amica1 adhesion molecule, interacts with CXADR antigen 1 ( MGI:2685484)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:19576 EMAGE:19576 EMAGE:19576 EMAGE:19576 EMAGE:19576
"Pseudo-wholemount" of euxassay_004985. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_004985_01 euxassay_004985_02 euxassay_004985_03 euxassay_004985_04
EMAGE:19576 EMAGE:19576 EMAGE:19576 EMAGE:19576 EMAGE:19576
euxassay_004985_05 euxassay_004985_06 euxassay_004985_07 euxassay_004985_08 euxassay_004985_09
EMAGE:19576 EMAGE:19576 EMAGE:19576 EMAGE:19576 EMAGE:19576
euxassay_004985_10 euxassay_004985_11 euxassay_004985_12 euxassay_004985_13 euxassay_004985_14
EMAGE:19576 EMAGE:19576 EMAGE:19576 EMAGE:19576 EMAGE:19576
euxassay_004985_15 euxassay_004985_16 euxassay_004985_17 euxassay_004985_18 euxassay_004985_19
EMAGE:19576 EMAGE:19576
euxassay_004985_20 euxassay_004985_21

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:19576Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
19576_wholemount_strong.wlz
19576_wholemount_moderate.wlz
19576_wholemount_weak.wlz
19576_wholemount_possible.wlz
19576_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:19576_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T8026
Entity Detected:Amica1, adhesion molecule, interacts with CXADR antigen 1 ( MGI:2685484)
Sequence:sense strand is shown

>T8026
CCCAGACAGAATCTGGCTCACATTGGCACTCACTGTTAGTTTGTTCAGTTAACAGTGTTCTCTGGATATA
ATTTTCTGATTTCTTTTTTAATCTTAAGATTGAAAACTTGAAAGGATAATGCTTTGCCTCCTGAAACTGA
TTGTGATTCCAGTAATCCTGGCCCCTGTAGGTTATCCACAGGGCCTGCCAGGCTTGACCGTTTCCTCCCC
TCAGCTGAGAGTGCATGTGGGTGAATCAGTCTTGATGGGATGTGTTGTCCAGCGCACAGAAGAGAAACAC
GTGGACAGAGTGGATTGGCTCTTCTCGAAAGATAAAGATGATGCGAGTGAATATGTGCTGTTCTACTATT
CCAACCTTAGCGTGCCTACGGGGCGCTTCCAGAACCGGTCACATTTGGTGGGGGACACCTTCCATAATGA
TGGTTCTCTCCTGCTCCAAGATGTTCAGAAGGCCGATGAGGGAATCTACACCTGTGAAATCCGCCTCAAA
AATGAGAGCATGGTGATGAAAAAGCCCGTGGAACTGTGGGTGCTACCAGAGGAACCTAAAGATCTCAGAG
TCCGAGTAGGTGATACAACTCAGATGAGATGTTCTATCCAGAGCACAGAAGAGAAACGGGTGACCAAAGT
AAACTGGATGTTTTCTTCAGGGAGCCATACTGAGGAGGAGACAGTCTTGAGCTATGACTCCAACATGCGT
AGTGGAAAATTCCAGAGCCTGGGCCGCTTCCGCAACCGTGTAGACCTGACAGGTGACATCTCCCGCAATG
ATGGCTCAATCAAACTTCAAACAGTGAAGGAGTCTGACCGAGGAATCTACACTTGCAGCATCTACGTGGG
AAAGCTGGAGTCCAGGAAAACCATTGTGCTGCATGTGGTCCAGGACGAATTTCAAAGGACAATTTCACCA
ACTCCTCCAACTGATAAGGGTCAGCAGGGCATCCTGAATGGAAATCAGCTGGTGATCATTGTGGGGATCG
TCTGTGCCACCTTCCTGCTGCTTCCGGTTTTGATATTAATTGTGAAGAAAGCCAAGTGGAATAAGAGCTC
AGTAAGTTCTATGGCTTCTGTGAAGAGCCTGGAGAACAAAGAGAAGATTAATCCAGAGAAGCATATCTAC
TCCTCCATAACTACGTGGGAGACGACAGAGAGAGGAATAAGTGGAGAGTCAGAGGGCACCTACATGACCA
TGAATCCAGTTTGGCCTTCTTCCCCCAAAGCATCCAGTTTGGTCCGCTCTTCAGTCAGATCCAAGTAATG
TGGTTGAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:30023491 using vector (pSPORT1) specific primers. Forward Primer - name:RZPD M13 forward, sequence:GCTATTACGCCAGCTGGCGAAAGGGGGATGTG; Reverse Primer - name:RZPD M13 reverse, sequence:CCCCAGGCTTTACACTTTATGCTTCCGGCTCG. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:30023491 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:19577 same embryo
 EMAGE:19575 same embryo
 EMAGE:19574 same embryo
 EMAGE:19573 same embryo
 EMAGE:19578 same embryo
 EurExpress:euxassay_004985 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS