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EMAGE:19648

Sf3a2 splicing factor 3a, subunit 2 ( MGI:104912)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:19648 EMAGE:19648 EMAGE:19648 EMAGE:19648 EMAGE:19648
"Pseudo-wholemount" of euxassay_005165. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_005165_01 euxassay_005165_02 euxassay_005165_03 euxassay_005165_04
EMAGE:19648 EMAGE:19648 EMAGE:19648 EMAGE:19648 EMAGE:19648
euxassay_005165_05 euxassay_005165_06 euxassay_005165_07 euxassay_005165_08 euxassay_005165_09
EMAGE:19648 EMAGE:19648 EMAGE:19648 EMAGE:19648 EMAGE:19648
euxassay_005165_10 euxassay_005165_11 euxassay_005165_12 euxassay_005165_13 euxassay_005165_14
EMAGE:19648 EMAGE:19648 EMAGE:19648 EMAGE:19648 EMAGE:19648
euxassay_005165_15 euxassay_005165_16 euxassay_005165_17 euxassay_005165_18 euxassay_005165_19
EMAGE:19648
euxassay_005165_20

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:19648Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
19648_wholemount_strong.wlz
19648_wholemount_moderate.wlz
19648_wholemount_weak.wlz
19648_wholemount_possible.wlz
19648_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:19648_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T8581
Entity Detected:Sf3a2, splicing factor 3a, subunit 2 ( MGI:104912)
Sequence:sense strand is shown

>T8581
AGTTTGTCGGTGGCGGCTGCTCCGTCGGGGAGGCTTGAAGGTTTCTTCCTGTCCCCTGAAGCACCCAGGC
CTGCATCATGGACTTTCAGCACAGACCTGGAGGCAAGACTGGGAGTGGGGGCGTAGCCTCCTCCTCTGAG
AGCAACCGGGATCGGAGAGAGCGTCTGCGCCAATTGGCCCTGGAAACCATTGACATCAACAAGGACCCGT
ATTTTATGAAGAACCACTTGGGATCCTATGAGTGCAAACTCTGCCTGACTCTGCATAACAATGAGGGGAG
CTACCTGGCCCATACCCAAGGGAAGAAACATCAGACTAACTTGGCCCGGCGAGCTGCCAAGGAGGCCAAA
GAAGCCCCCGCCCAGCCTGCACCGGAGAAGGTCAAGGTGGAGGTGAAGAAGTTTGTGAAGATTGGCCGCC
CTGGGTACAAAGTGACCAAGCAGAGGGACACAGAGATGGGCCAGCAGAGCCTGCTGTTCCAGATTGACTA
CCCTGAGATCGCAGAGGGTATCATGCCACGCCACCGTTTCATGTCTGTTTATGAGCAGAGGATCGAGCCT
CCAGACCGCCGCTGGCAGTACCTGCTCATGGCTGCTGAGCCCTATGAGACCATTGCTTTCAAGGTGCCAA
GCCGGGAGATTGACAAGGCTGAGGGCAAGTTTTGGACCCACTGGAACAGAGAAACCAAGCAGTTTTTTCT
TCAGTTCCACTTTAAGATGGAGAAGCCCCCAGCACCTCCCAGCCTCCCAGCAGGACCCCCAGGCGTCAAG
CGGCCCCCGCCCCCACTCATGAATGGACTGCCTCCTCGCCCACCACTCCCTGATGCCTTGCCCCCACCTC
CACCTGGTGGCCTGCCTCTCCCTCCTATGCCCCCCACTGGGCCTGCTCCCTCTGGGCCCCCTGGACCTCC
CCAGATGCCCCCACCAGCTCCTGGGGTGCACCCCCCGGCCCCAGTAGTACACCCACCAACATCTGGAGTC
CATCCCCCAGCTCCTGGGGTACACCCCCCAGCACCAGTGGTCCATCCACCAACATCTGGGGTCCATCCCC
CAGCCCCTGGAGTGCACCCACCCACCCCTGGAGTGCACCCACCAGCCCCAGGAGTGCACCCACCAGCTCC
AGGTGTCCACCCACCAGCTCCAGGGGTACACCCCCCAACTCCAGGGGTGCACCCACCAGCTCCAGGGGTG
CACCCACCAGCTCCAGGGGTGCACCCACCAGCTCCAGGGGTACACCCTCCTCCATCAGCTGGAGTTCATC
CTCAGGCTCCAGGGGTACACCCACCTGCTCCTGCAGTACACCCTCAAGCCCCTGGGGTACACCCCCCAGC
CCCTGGGATCCACCCTCAGGCACCAGGGGTTCACCCTCAGCCGCCTCCTGGAGTCCACCCTGCTGCCCCG
GGGGTCCACCCTCAGCCTCCAGGGGTTCACCCCTCAAATCCTGGGGTGCACCCTGCTCCTATGCCCCCCA
TGCTGAGGCCCCCACTCCCCTCAGATGGCCCTGGGAACATGCCTCCCCCTCCCCCAGGCAACTGAGCAGT
CCCCCCACCAGCCTCTGTTGTCTGTGTGGTCTTTTCCCATTGCCAGTCCTTGGAAGGTTTTCTATTTGTC
CTGCCTTGAGCCTATTAAACAGCCTCCCCCGTGAAAAAAAAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:5715282 using vector (pYX-Asc) specific primers. Forward Primer - name:RZPD T3, sequence:ATTAACCCTCACTAAAGGGA; Reverse Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:5715282 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:19651 same embryo
 EMAGE:19653 same embryo
 EMAGE:19649 same embryo
 EMAGE:19652 same embryo
 EMAGE:19650 same embryo
 EurExpress:euxassay_005165 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS