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EMAGE:21143

Nmd3 NMD3 homolog (S. cerevisiae) ( MGI:2140103)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:21143 EMAGE:21143 EMAGE:21143 EMAGE:21143 EMAGE:21143
"Pseudo-wholemount" of euxassay_004035. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_004035_01 euxassay_004035_02 euxassay_004035_03 euxassay_004035_04
EMAGE:21143 EMAGE:21143 EMAGE:21143 EMAGE:21143 EMAGE:21143
euxassay_004035_05 euxassay_004035_06 euxassay_004035_07 euxassay_004035_08 euxassay_004035_09
EMAGE:21143 EMAGE:21143 EMAGE:21143 EMAGE:21143 EMAGE:21143
euxassay_004035_10 euxassay_004035_11 euxassay_004035_12 euxassay_004035_13 euxassay_004035_14
EMAGE:21143 EMAGE:21143 EMAGE:21143 EMAGE:21143 EMAGE:21143
euxassay_004035_15 euxassay_004035_16 euxassay_004035_17 euxassay_004035_18 euxassay_004035_19
EMAGE:21143 EMAGE:21143
euxassay_004035_20 euxassay_004035_21

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:21143Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
21143_wholemount_strong.wlz
21143_wholemount_moderate.wlz
21143_wholemount_weak.wlz
21143_wholemount_possible.wlz
21143_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:21143_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T6127
Entity Detected:Nmd3, NMD3 homolog (S. cerevisiae) ( MGI:2140103)
Sequence:sense strand is shown

>T6127
GCCGGTAGTGCGTCCTGGCCGGCGGGTTGCCCGCTGTGAGTGTATTTCGCCCTGTCACGGAGCTGCTGGT
CGCGCGCGAACCATGGAGTACATGGCAGAGTCCATTGAGCACAGCCCGGGACACATCTTGTGCTGTGAAT
GTGGTGTCCCAATTAGTCCAAATCCTGCCAATATTTGTGTGGCCTGTTTACGAAGTAAAGTTGACATCAG
CCAAGGTGTTCCAAAGCAGGTCTCCATTTCTTTCTGCAAACAGTGTCAGAGATATTTTCAGCCACCAGCA
TCATGGGTACAGTGTGCTTTAGAGTCCAGGGAACTTCTTGCTTTGTGTTTGAAAAAAATTAAAGCTCCTC
TGAGTAAGGTTCGGCTTGTCGATGCAGGCTTTGTTTGGACTGAGCCCCATTCCAAGAGACTTAAAGTTAA
ATTGACAATTCAGAAAGAGGTGATGAATGGTGCTATCCTGCAGCAAGTGTTTGTGGTAGATTATGTTGTT
CAGTCCCAAATGTGTGGAGACTGCCATAGAGTGGAAGCTAAGGATTTCTGGAAGGCTGTGATCCAAGTCA
GGCAAAAGACTCTACACAAGAAAACATTCTACTATCTGGAACAGTTGATTTTAAAATATGGAATGCATCA
GAATACACTGCGTATCAAGGAGATTCATGATGGTCTGGATTTTTATTATTCTTCAAAACAGCATGCTCAG
AAGATGGTGGAGTTTCTTCAGGGTATAGTTCCCTGTAGATACAAAGCATCACAAAGATTGATCTCTCAGG
ATATTCATAGTAACACATACAATTACAAGAGTACTTTTTCTGTGGAAATTGTTCCAATATGCAAGGATAA
TGTTGTCTGTCTATCACCAAAACTGGCACAGAGCCTTGGAAATATGAGTCAGATATGTATTTGTATTCGA
GTAACTAGTGCCATCCACCTCATAGACCCAAATACCCTACAAGTTGCAGATATTGATGGAAACACTTTCT
GGAGTCATCCTTTCAATAGTTTATGCCATCCTAAACAGCTCGAAGAGTTTATTGTGATAGAATGCAGCAC
AGTCCGAGATCTGAAGCGAAGCGCGGGGGCTGGAGTGATATCAAAAAAGCACACCCTTGGGGAAGTCTGG
ATCCAGAAGACATCGGAAATGAATACAGATAAACAGTATTTTTGCCGAACTCACTTGGGACATCTTTTAA
ATCCTGGAGACCTGGTGCTGGGATTTGATTTGGCCAACTGTAACTTAAATGATGAGTATGTCAACAAAAT
GAACTCAGACAGAGTTCCAGATGTGGTGTTAATTAAGAAGAGCTATGACCGCACCAAACGCCAGCGCCGT
AGAAACTGGAAACTGAAAGAGCTTGCAAGAGACAGAGAAAACATGGACACAGATGATGAAAGGCAATATC
AAGATTTTCTTGAAGATCTTGAAGAAGATGAGGCAATTAGAAAACATGTCAACATTTACAGAGATGCAAC
CATCCCTGTGGAAAGTGACACAGATGATGAAGGAGCACCTCGAATTAGTCTGGCTGAGATGCTTGAAGAC
CTTCATATTTCTCAAGATGCCACTGGTGAAGAAGGTGCATCAATGATGTCATGATGAGTCATATTATATG
TTGCTTGCATATCTGTGGCCTCAGGAAGTTGGCAAAAACCTTTATTGTACAGTACATATATTCCCTTATA
TTTTAAAAGAAATTTGACCTTAAACTTTAATAAATTACTATTTTAATTGTTCCCTTAAAAAAAAAAAAAA
AAAAAAA
Notes:The probe template was PCR amplified from IMAGE:3495021 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:3495021 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EurExpress:euxassay_004035 same experiment
 EMAGE:21142 same embryo
 EMAGE:21144 same embryo
 EMAGE:21145 same embryo
 EMAGE:21146 same embryo
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS