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EMAGE:29882

Siglecl1 ( MGI:1932475)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:29882
euxassay_006520_01

View assay images: EMAGE genex expression entry
Expression pattern clarity: one star
Expression Pattern Description
Detection Reagent
Type:in situ hybridisation probe
Identifier:T6719
Entity Detected:Siglecl1, ( MGI:1932475)
Sequence:sense strand is shown

>T6719
CCTGAAGAGACAGTTTTAGCTGGACATGCTGCTGTTGCTGCTGCTGCTGCTGCTGCTCTGGGGGATAAAG
GGTGTGGAGGGTCAGAACCCCCAAGAGGGTTTCACCCTGAATGTGGAAAGGAAGGTGGTGGTGCAGGAGG
GCCTGTGTGTCCTTGTGCCCTGTAACTTCTCCTATCTCAAGAAGAGGTTGACTGACTGGACTGACTCAGA
CCCAGTTCATGGATTCTGGTACAGGGAAGGAACCGACAGACGCAAAGATTCCATCGTGGCCACAAATAAC
CCAATTCGTAAAGCAGTGAAGGAAACCCGGAATCGATTCTTCCTGCTCGGAGAACCTTGGAGGAATGACT
GCTCCCTGAACATCAGAGAGATCAGAAAGAAGGATGCGGGGTTATACTTCTTTCGCCTGGAGCGTGGAAA
AACAAAGTATAATTACATGTGGGACAAGATGACTCTGGTTGTAACAGCCCTCACTAACACCCCCCAAATT
CTTCTCCCGGAGACGCTTGAAGCTGGCCATCCCAGCAACCTGACCTGCTCTGTGCCTTGGGACTGTGGGT
GGACGGCACCTCCCATCTTCTCCTGGACTGGTACCTCTGTGTCATTTTTGAGCACCAACACTACAGGTTC
CTCAGTGCTAACCATCACCCCTCAGCCTCAGGACCATGGCACCAACCTCACTTGTCAGGTGACCCTGCCT
GGAACTGATGTGTCCACAAGAATGACCATCCGTCTCAACGTGTCATATGCTCCAAAGAATCTGACTGTGA
CCATCTATCAAGGAGCTGACTCAGTTTCCACAATCCTGAAGAATGGCTCATCTCTTCCTATCTCTGAGGG
CCAGTCACTGCGTCTCATCTGCAGCACCGACAGCTATCCCCCTGCGAACCTAAGCTGGTCCTGGGATAAC
CTGACCCTGTGCCCATCAAAGTTGTCCAAGCCCGGGCTCCTGGAGCTGTTTCCAGTGCATCTTAAGCACG
GAGGAGTGTATACCTGCCAAGCTCAACATGCCCTGGGCTCCCAACACATTTCCTTGAGCCTGTCTCCACA
GAGCAGTGCAACTTTATCTGAAATGATGATGGGGACCTTTGTGGGTTCAGGAGTCACAGCCCTCCTTTTC
CTGTCTGTCTGCATCCTCCTCCTGGCAGTAAGATCCTACAGGAGGAAACCAGCCAGGCCAGCTGTGGTAG
CTCCGCACCCAGATGCCCTCAAGGTCTCAGTTTCTCAGAATCCCCTGGTTGAATCCCAGGCAGATGACAG
CTCTGAGCCCCTGCCTTCCATACTTGAGGCGGCCCCCTCCTCCACAGAGGAAGAGATACATTATGCGACC
CTCAGCTTTCACGAGATGAAGCCCATGAACCTGTGGGGGCAACAGGACACTACCACGGAGTACTCAGAGA
TAAAGTTTCCGCAAAGGACCGCATGGCCATGACCGTGGCTGGAGAAAGCATGGTGGCCCCAGGAGGCTGG
CTCTGGAGAAGGAAAGAGTCACCTAGGTTGACATGTGATACACAGGGCTTCAGAGCCATTCCTTCTGTGA
CACAGGCGTTCTGTGCTGCCCATGCCCCTGTGCTGCCCTGTCCACACAACTGCTATTGTGCCCTGGGAAT
CATAAGCTTGACCTTTTTACTCCTCTTCTCCCCTTCCCCTCCTTCCCCGCCCCCTCTTCTCCTCCTCCTC
TCTCCCCTCTCCTCCCCTCTTCCTTTTGTTTTTTCCAAGACAGGGTTTCTCTGTGTAGCCTTGGCTGTCC
TAGAACTTGCTCTGCAGACCAGACTGCCCTTGAACTCTTCTTTCCAAGTGCTGGGATTAAAGATGTGCAC
CACCACCCAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:3662856 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZ. T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:3662856 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EurExpress:euxassay_006520 same experiment
 EMAGE:29871 same embryo
 EMAGE:32167 same embryo
 EMAGE:29226 same embryo
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS