EMAGE mouse gene expression spatial database

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EMAGE:30408

Nudcd3 ( MGI:2144158)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


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euxassay_005051_21	euxassay_005051_22	euxassay_005051_23	euxassay_005051_24

View assay images:
Expression pattern clarity:

Expression Pattern Description

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T7473
Entity Detected:	Nudcd3, ( MGI:2144158)
Sequence:	sense strand is shown >T7473 GCCCACTGTGTTCGCGTCCCTCGGGCAGCAGAGCCATGGAGCCCGGGGCTGCTGAGCTTTATGACCAGGC CCTGTTGGGCATCCTGCAGCACGTGGGCAATGTCCAGGACTTTCTGCGCGTGCTCTTCGGCTTTCTCTAC CGCAAGACCGACTTCTACCGCCTGCTGCGCCACCCTTCGGACCGCATGGGCTTCCCGCCCGGGGCCGCAC AGGCCCTGGTGCTGCAGGTCTTTAAAACATTTGATCACATGGCCCGCCAGGATGATGAGAAAAGGAAGAA AGAACTAGAAGAGAAAATAAGAAAAAAGGAGGAAGAGGCCAAGGCCTTGCCAGCTGCTGAAACTGAGAAG GTAGCGGTGCCGGTCCCAGTGCAGGAGGTAGAGATCGATGCTGCTGCAGACTTGAGTGGGCCTCAGGAAG TAGAGAAGGAGGAGCCCCCAGGCTCCCAGGACCCCGAGCACACAGTGACCCATGGCCTGGAGAAGGCGGA AGCTCCAGGAACAGTTAGCAGTGCTGCTGAAGGCCCTAAGGACCCTCCTGTGCTCCCCAGGATTCAGGAG CAGTTCCAGAAAAATCCTGACAGTTACAACGGTGCCATCCGTGAGAACTACATCTGGTCGCAAGACTACA CCGACCTGGAGGTCAGGGTGCCCGTGCCCAAGCATGTGATGAAGGGGAAGCAGGTCTCTGTGGCCCTTAG CAGTGGCACCATCCGAGTGGCCATGGTGGAAGAGAATGGAGAGCGTGTCCTCATGGAGGGGAAGCTCACT CACAAGATCAACACCGAGAGCTCCCTCTGGAGCCTTGAGCCCGGCAGGTGTGTTTTGGTGAATCTGAGCA AGGTTGGCGAGTACTGGTGGAGTGCCATCCTGGAGGGGGAAGAGCCCATCGACATCGACAAGATCAACAA GGAGCGCTCCATGGCTACTGTGGATGAGGAGGAGCAGGCAGTCCTGGACAGACTCACCTTTGACTACCAC CAGAAACTGCAGGGCAAGCCCCAGAGCCACGAGCTGAAAGTCCATGAGATGCTGAAGAAGGGGTGGGATG CTGAAGGCTCTCCCTTCCGAGGCCAGCGATTCGACCCAGCCATGTTCAACATCTCCCCAGGGGCTGTGCA GTTTTAATGACCGGAAGTAAAGGAAACCCTCGCCATTGGGGAGATGGAGACGTTGTCCTCCTCACTCCCT GCATGCCAGGGACTCACTTCTCCTGATCAGTCCTAGCCATTTTTTTCTTTCATGATGAACCAGGCCTTCC ATGCTGACCTTCTACCTTCAGACTATTCTAGAGAAGGTACAGGGCCAGCTGCTGCTTGGCAGTGTCTGTG GCCAACACTGAATGCAGGTGTTTGACATGCAGGAGGGACATGTCCCAGCCTACTGGTAGCACATGTTCTG TCTCCACAGCAACCAGGCACTGCAGGCAGCATTTCCTTTCTCCCCGTTCTCTCTGCTTGCTGTTGTTTTG ACGCTATTCTGCTTGCTTGTCTTCTGATTGGGGATAAGGAGTGGCTGGGCTCAGACAAAGCTAAGTTGTT GTGTGGAGCCAGGCACCTGCATGAGGGCCAGCGGGGCATGGCTGTGGGGCTGCTATGGGGTTCCCTCACT TGTTGTTGATCTGTGTCTATCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGCCATCTTGCTCATTTCTTT GTGAATACACTTGACTTGCCTCAGTTTTATGGGCAGAGCAGCAGGAACTGGGTCTGTTTGAGATGGTAGG AGAAAGTCTGAGGTTCTGGCCTCTCACCCAGGTGTGGTAAGGATTCTGTCTGCCCTCTGACTGCAGCTGC CTTGCTTTGATTCTTGTTGAAATGAGCTGAGACTAGCCACCACTACTTTTTCCCCTCAAGACCTCCTCTT TGGGGGTGCTGCATTCAAGCCTGGGTACCTCCAAGAAGAGATCACAGCCTGTTGGTAGTTCATTGGCAGA TCCGTGTCAACTACACTCCCTAAGGAGCTTTGACCCGGAAGCATGCCTCAGGAAGGAAAACGTATGCACT AGCTTGAAGGCAACTACAATTGAGTCCAAGAAAATGAAGATTTCTCTGTGCCAATCACTAGACTGCTTTT TGGAGCTCAGAGCCTGTGTGGCGACGCCAGCTAAGGGTGTGAAGACCTGCCCAGAGGACCAGGACCCTGG TGTCCCATCCCTTTACGTACTCTCTCTGTGCTGGTTGGTGCCTGGCATCTCCATTTGCCTGGTTCTTAGT TGTGTGGTGTGTGTGTGTGTGTGTTCACGTCACAGCACTAATTTCTATACTCTGGTAACCAACCATACAA AGTGCAAGAATTAAGACCCATTGAAGCCAAGGCAGACTGTTCTCTGGAAAGAGCCCTGCACCACCGAGTG CTATGTCCACTTGCTTGGAAGGAGCCATTGGAAGAGCAAATTTTGGAACTTACACAATTGTGTAGAAAGG AGCTGGTTCATTGTAGGCATTTAAGGGATTTCTGGTTTACTTCCTAAAAGTCCATACTGGGAGTTAATCT GTGGGCCTGAGTAGACCATGATGGTGGTCAAGGGACAGCAGTGGACCCCATATACCCACTCCAGAGTCTG AACATGTGATTGGACATTGGTCATCAAGTTGATGAAATCTCCCTCAAGAGGTCACCGTCCAGGAGCAGAA TCTGTCGTAGTCACAAGATCCCCAGGACACTTTGCTGTTTGTTCCTGAAGTTTTCATCAAGGTCTAGGCT GCGCACATCCCTGTCCCATGGAAGCTGTCTCACCTAAAGAAGGAAGTCTCGTGGTGTGTGTGCACCTGCA GTCTTCTCCCTCTCGGCCCTCATCCTGTGGGTAGTCTTGCAGAAGGAATGATGTCGTGGCGGAACCCTGC ATCCTTTTATTTAAGACAATGCTTTTCTCTGTGTTGACTCATCTTCATTACTGTAGCATGGTTTTATTTT CTGTGTTGCATTTTTTTCTTTGTCCCTGCCGTGTTTCAACAAACAAGCCTGTATAGAAAAAGCAGCCTGG GGGATATAGCACTGGTTGTAGGCCGTGGGGCAGGAAGCTGTGACTGATCCCTGGGGCATGTTGTAGTACA TGGTGTAGTGGTGGCTTCTGTATCTACATGTCTCCATCACAGTGAGGCTCAATCCCAGCCAGCCAAGTAG ATAGTTCTTTGCCCTGAGGCACTGCCCTGGTTTGCCCCGCCACTGAAGCTGGCACATTGCCTGTTTTCTC TTTTTAGACACGACAGCCACAGTGTGGTCTCTAAGTCCCACCAGCTGAGGTCTGAGGAAAGCAGGGTGAC TCTGTCCCCTTTGCCCAGAGACCCAAAGAGTGGGGTGTCCAGCCTGCAGAGTTGCTCTGGCTCCTCGGTG TTGGTTTGCAATAAATCTGTGTTTAAGCAAAAAAAAAAAAAAAAAAAAAA
Notes:	The probe template was PCR amplified from IMAGE:4236345 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZ. T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:4236345 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EurExpress:euxassay_005051 same experiment
	EMAGE:30593 same embryo
	EMAGE:31032 same embryo
	EMAGE:30410 same embryo
	EMAGE:31852 same embryo
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source