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EMAGE:30646

Zcchc9 ( MGI:1916335)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
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View assay images: EMAGE genex expression entry
Expression pattern clarity: one star
Expression Pattern Description
Detection Reagent
Type:in situ hybridisation probe
Identifier:T6643
Entity Detected:Zcchc9, ( MGI:1916335)
Sequence:sense strand is shown

>T6643
CGATTAGTGGAGTACCTCTGATCCAACCATGACCAGGTGGGCTAGAGTTACTACTTCAAATAGTAAGCGA
CCCCTGTCAGCAACATCATGGGAGGACATGAAGAAGGGGTCTGTGGAGAGAGCAGACCAAAGCCTTCCAA
ATCGTAAGCAGTGTCAAAGCAGTAGGCTGCCCCTTAGAAATGACTCACCTCAAGCAAAACGCAAAAAGAA
CAAAAAGAAAAAAGAGTACTTGAATGAAGACGTGAACGGCTTCATGGAGTACCTGAAGCAGAACTCACAG
GTACTTCACAATGGACAGCTGATAGCAGCTGACAGCCAGGAAGTGAGGGAAGAAATTGCCGTGGCCTTAA
AGAAGGACAGTCGACGGGAAGGAAGGCGGCTAAAGAGACAGGCGGCAAAGAAGAATGCAATGGTGTGTTT
CCATTGTCGACAACCTGGCCACGGAATTGCTGACTGTCCAGCTGTACTAGAGAGTCAGGACATGGGCACC
GGCATTTGTTACCGCTGTGGGTCCACGGAGCACGAGATGTCCAAGTGCAGAGCTAACGTAGACCCCGCGC
TTGGTGAATTTCCTTTTGCAAAATGTTTTGTCTGCGGAGAAATGGGACACCTGTCCAGATCCTGCCCTGA
TAATACCAAAGGAGTCTATGCTGATGGTGGCAGCTGTAAACTCTGTGGCTCCGTGGAACATTTTAAGAAA
GATTGCCGAGAAAATCAGAACTCAGATCGGATCATCACGGTTGGTCGCTGGGCAAAGGGTATGAGTGCAG
ACTATGAAGACGTGCTGGATGTGCCCAAACTGCAGAAACCTAAAACCAAAGTACCCAAAGTTGTTAATTT
TTTTATACTAATTGGTACAATTGTTAATTACCACCTCAAGGTTACTTTCCAAACTCAGCCTTTAGCGATT
GAAGCTGGGCAACTGTGGAGGCAAAGCTGTGTTATAGACACCACTCTGACCTTGGTAGCTTGCCTACAAT
CAATCTATCAAGGCGTACAGGTTGATTAATTACACTCTCTAGAAATGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGGTCTATCTATCTCTCTGTGCCTGTGTGTCTGTCTGTATTTGAAGC
AGATTCTATGTAGCCCAGGTTGGCTTCACACTAATAACCGTGCTCCAGCATCCAGAGTACTGTGCCTAAG
AGCATATTTTACAGATGGAACTTAGAAATGACTAAATGCCTCTATACCTGATTATAGCAGTCATCACTAT
AAATGTAAATTATGAATCAAAATTGACCCCTAAACAAAGCACATGCCTTTCAGCTTGTGAATCAAAAAAT
ATTTTGTTATATGCTCTTAATTCAGAGTATCAATTTTTTGTAATAGAAATTTATTTATATGTTGTCACAA
AATCTGTAATTCTTAGTACTGAATAAAATTATATCAGCTGTTAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:3599595 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZ. T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:3599595 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EurExpress:euxassay_003636 same experiment
 EMAGE:29868 same embryo
 EMAGE:30684 same embryo
 EMAGE:30682 same embryo
 EMAGE:30689 same embryo
 EMAGE:30654 same embryo
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS