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EMAGE:30866

Ppil1 ( MGI:1916066)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:30866 EMAGE:30866 EMAGE:30866 EMAGE:30866 EMAGE:30866
euxassay_005130_01 euxassay_005130_02 euxassay_005130_03 euxassay_005130_04 euxassay_005130_05
EMAGE:30866 EMAGE:30866 EMAGE:30866 EMAGE:30866 EMAGE:30866
euxassay_005130_06 euxassay_005130_07 euxassay_005130_08 euxassay_005130_09 euxassay_005130_10
EMAGE:30866 EMAGE:30866 EMAGE:30866 EMAGE:30866 EMAGE:30866
euxassay_005130_11 euxassay_005130_12 euxassay_005130_13 euxassay_005130_14 euxassay_005130_15
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euxassay_005130_16 euxassay_005130_17 euxassay_005130_18 euxassay_005130_19 euxassay_005130_20
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euxassay_005130_21 euxassay_005130_22

View assay images: EMAGE genex expression entry
Expression pattern clarity: one star
Expression Pattern Description
Text Annotation:
StructureLevelPatternNotes
metanephros
strong strong
regionalstrong expression: see section 03 04 05 06 07 12 13 14 15
spinal cord
moderate moderate
regionalmoderate expression: see section 07 08 09 10 11 12 13
rectum
strong strong
regionalstrong expression: see section 10
bladder
moderate moderate
regionalmoderate expression: see section 10 11
lower jaw molar
moderate moderate
regionalmoderate expression: see section 07 08 17 18 19
pharyngo-tympanic tube
strong strong
regionalstrong expression: see section 21 22 moderate expression: see section 01 02 03
upper jaw molar
moderate moderate
regionalmoderate expression: see section 07 08 17 18 19
trachea
moderate moderate
regionalmoderate expression: see section 10 11
vertebral axis musculature
moderate moderate
regionalmoderate expression: see section 01 13 14 15 weak expression: see section 02 03 04 05 06 07 08 09 10 11 12 16 17 18 19 20 21 22
thymus primordium
strong strong
regionalstrong expression: see section 08 09 11 12
nasal cavity respiratory epithelium
moderate moderate
regionalmoderate expression: see section 13 14 16 17 18 19
vibrissa
strong strong
regionalstrong expression: see section 07 08 09 21 22 moderate expression: see section 05 weak expression: see section 06
telencephalon ventricular layer
strong strong
regionalstrong expression: see section 01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20
midbrain ventricular layer
strong strong
regionalstrong expression: see section 03 04 05 06 07 08 09 10 11 12
nasal cavity olfactory epithelium
strong strong
regionalstrong expression: see section 09 moderate expression: see section 08 10 11 12 13 14 15 16 17 18 19
orbito-sphenoid
moderate moderate
regionalmoderate expression: see section 20 21 22
larynx
strong strong
regionalstrong expression: see section 15
stomach
moderate moderate
regionalmoderate expression: see section 01 02 03 04 05 06
tongue
moderate moderate
regionalmoderate expression: see section 13 17 weak expression: see section 10 11 12 14 15 16
urethra of male
moderate moderate
regionalmoderate expression: see section 10 11
brain
moderate moderate
regionalmoderate expression: see section 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22 weak expression: see section 01 02 03
retina
moderate moderate
regionalmoderate expression: see section 01 02 03 04 22
midgut
strong strong
regionalstrong expression: see section 08 09 10 11 12 13 14 15 16 17
thyroid gland
strong strong
regionalstrong expression: see section 08 09 12
hepatic duct
strong strong
regionalstrong expression: see section 06
submandibular gland primordium
strong strong
regionalstrong expression: see section 06 07 08 15 16 17
naso-lacrimal duct
moderate moderate
regionalmoderate expression: see section 07 08 09 19 20 21 22 weak expression: see section 04 05 06
tail
moderate moderate
regionalmoderate expression: see section 13 14 15 16 weak expression: see section 09 10 11 12
liver
strong strong
regionalstrong expression: see section 01 02 03 04 05 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22
lower jaw incisor
moderate moderate
regionalmoderate expression: see section 11 12 13 15 16
upper jaw incisor
moderate moderate
regionalmoderate expression: see section 12 13 16
lung
strong strong
regionalstrong expression: see section 01 02 03 04 05 06 07 08 09 10 11 12 13 14 16 17 18 19 20
Annotation Validation: text annotation by author
Detection Reagent
Type:in situ hybridisation probe
Identifier:T8578
Entity Detected:Ppil1, ( MGI:1916066)
Sequence:sense strand is shown

>T8578
AGCATGGCGGCGATTCCCCCAGACACCTGGCAGCCGCCCAACGTCTACCTGGAGACTAGCATGGGAGTCA
TTGTCCTGGAGCTATACTGGAAGCATGCGCCCAAGACCTGCAAGAACTTCGCGGAGCTGGCTCGGCGGGG
CTACTACAATGGCACCAAGTTCCACAGGATCATCAAGGACTTCATGATCCAAGGCGGCGACCCGACAGGC
ACAGGTCGAGGTGGCGCATCTATTTATGGCAAACAGTTTGAAGATGAGCTTCATCCAGACCTGAAGTTCA
CTGGGGCTGGGATTCTCGCCATGGCCAACGCAGGACCAGACACCAATGGCAGCCAGTTCTTTGTGACCCT
GGCCCCCACGCAATGGCTGGACGGCAAGCATACTATTTTTGGCCGAGTGTGCCAGGGTATAGGGATGGTG
AATCGAGTGGGCATGGTGGAAACAAACTCCCAGGACCGTCCTGTGGACGACGTGAAGATTCTTAAGGCGT
ACCCCTCTGGATAGGTGGGATGCTGTCCCCAGCACTCCCAGGCCCCCGGGAGCTGGTTTCCGGATGACGT
AGGGTGCTGTGTGATTCTGCGTCATGCATACCTACTCCGAAGCAGAGGGGTCGTCTCTGGGGACGTTTGT
ATTCTGGCCGACAGTCACAGACTTGAAAAGCGGGCCGCGTTGATGAGCGCACTAGCTGCGCACCCCCTGT
TCACAGCCCCGTTCAGCCTCCAGCGTGAGTTCTTCCAGGAATATGCACAGCTCACTCGCTCTTCCCTCTG
AGCCTGAGCATCAATACTGCTGCTTCTGACACTACACATCCCACGCAAAGCCATATTGAATTGTTGCCAA
ATGAAAAATGCATCCAACAGTCAAGTGCTGAGAAGGTGTCAAGTGGGGATGATAATGTGTAATGATTGGG
CAATGAATCTCTGAGAGGAAGCAGGAAGGAGCCTTGGCCATTTTTCCCCGGGGAGGGATGGGAGTCTAGT
GAGCACAAGGCCGTCACAGGCTTCCCACAGGAAGTGACATGCTTTAGGGCTTTAGAGAAAATAGGTAAGA
GGTTTTTGTGCATGATGTCCTTGGTTTTTTTTTTACTATTTGGATTTCAAGGGAGTGGGGCAAGAAGGGT
GTTAATACCTATGTAATACATAGAAACTTACAGAATAAACCACCATGGTGGTTGAAATCACAAAAAAAAA
AAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:5715252 using vector (pYX-Asc) specific primers. Forward Primer - name:RZ. T3, sequence:ATTAACCCTCACTAAAGGGA; Reverse Primer - name:RZ. T7, sequence:TAATACGACTCACTATAGGG. Anti-sense probe was then transcribed from the PCR amplified template usi. T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:5715252 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EurExpress:euxassay_005130 same experiment
 EMAGE:30946 same embryo
 EMAGE:30857 same embryo
 EMAGE:30893 same embryo
 EMAGE:29224 same embryo
 EMAGE:31337 same embryo
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS