EMAGE mouse gene expression spatial database

Quicksearch Help

(Click the icon to keep this page displayed.)

EMAGE:31371

Slc30a3 solute carrier family 30 (zinc transporter), member 3 ( MGI:1345280)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


euxassay_019721_01	euxassay_019721_02	euxassay_019721_03	euxassay_019721_04	euxassay_019721_05

euxassay_019721_06	euxassay_019721_07	euxassay_019721_08	euxassay_019721_09	euxassay_019721_10

euxassay_019721_11	euxassay_019721_12	euxassay_019721_13	euxassay_019721_14	euxassay_019721_15

euxassay_019721_16	euxassay_019721_17	euxassay_019721_18	euxassay_019721_19	euxassay_019721_20

euxassay_019721_21	euxassay_019721_22	euxassay_019721_23	euxassay_019721_24

View assay images:
Expression pattern clarity:

Expression Pattern Description

Text Annotation:

Structure

Level

Pattern

Notes

hypothalamus mantle layer

strong

regional

strong expression: see section 11 12 moderate expression: see section 16

medulla oblongata basal plate mantle layer

strong

single cell

strong expression: see section 08 09 10 11 12 13 14 15 16 17 18 19

spinal cord mantle layer

strong

regional

strong expression: see section 11 12 13 14 15 16 17

telencephalon mantle layer

strong

single cell

strong expression: see section 06 07 08 20 22 23 24

midbrain mantle layer

strong

regional

strong expression: see section 07 08 09 10 11 12 13 15 16 17 18 19 20

diencephalon lateral wall mantle layer

strong

regional

strong expression: see section 08 09 10 11 12 13 18 19 20 moderate expression: see section 15 16 17

metanephros

moderate

regional

moderate expression: see section 08 09 10 11 weak expression: see section 19 20 21 22

rest of cerebellum mantle layer

strong

regional

strong expression: see section 07 08 09 10 11 12 13 15 16 17 18 19 20

medulla oblongata alar plate mantle layer

strong

single cell

strong expression: see section 09 10 11 17

rest of cerebellum ventricular layer

strong

regional

strong expression: see section 05 06 07 08 09 10 18 19 20 21 22 23

pons mantle layer

strong

single cell

strong expression: see section 07 08 09 10 11 12 13 14 15 16 17 18 19 20

Annotation Validation:

text annotation by author

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T56044
Entity Detected:	Slc30a3, solute carrier family 30 (zinc transporter), member 3 ( MGI:1345280)
Sequence:	sense strand is shown >T56044 GTTCGGACTCCGAGCGCCACAGTCGCCGCAGTTCCCTCCACACTGGTGGCCCAGCGGGGAGTCCGAGTGG TCCTTGGACCGCTCGGATTTGGCGCAAGGCCTGCCCCGCCTCTCCCCCTCTGTGCGGCCTAGACGGTCTG GGCAGCGGGGACATGGAGCCTTCTCTGGCCACCGGAGGCTCGGAGACCACCCGCCTAGTGAGTGCCCGAG ACCGCAGCAGCGCTGGCGGCGGCCTGCGATTGAAGAGTCTTTTCACAGAGCCCTCAGAGCCCCTGCCTGA GGAGCCCAAGCTTGAGGGGATGGCCTTCCACCACTGCCACAAGGACCCCGTGCCTCAGTCAGGCCTCTCT CCAGAGAGGGTGCAAGCCCGGAGGCAGCTGTATGCCGCCTGCGCTGTGTGCTTCATCTTCATGGCCGGGG AGGTGGTTGGTGGGTATTTAGCACACAGCTTGGCCATCATGACTGATGCCGCCCACTTGCTAGCAGACAT AGGCAGCATGTTGGCCAGCCTCTTTTCCCTCTGGCTTTCCACTCGGCCAGCCACCCGCACCATGACCTTT GGCTGGCACCGCTCAGAGACTCTGGGAGCTTTGGCCTCTGTGGTCTCCCTCTGGATAGTCACTGGCATCC TCCTGTACCTGGCCTTCCTCCGCCTGCTTCATAGTGACTATCACATTGAGGCGGGTGCCATGCTGCTGAC TGCCAGCATCGCTGTCTGTGCCAATCTGCTAATGGCCTTTGTGCTGCACCAGACTGGAGCCCCCCACAGC CATGGATCTACAGGTGCAGAGTATGCACCTCTAGAGGAAGGGCATGGATACCCAATGTCCCTGGGAAACA CGAGTGTCCGGGCTGCCTTTGTGCATGTGCTGGGAGACCTCCTTCAGAGCTTTGGGGTCCTGGCAGCCTC GATCCTCATCTACTTCAGGCCTCAGTACAAGGTAGCTGACCCCATCAGCACCTTCCTCTTCTCCATCTGC GCCCTTGGGTCCACAGCTCCCACACTTCGAGATGTTCTCCTTGTCCTCATGGAAGGCGCCCCTCGGAGTG TGGAATTTGAACCCGTAAGGGACACCTTGTTGTCCGTGCCGGGAGTCCGAGCAACCCATGATCTCCATCT GTGGGCCCTGACGCTTACTTACCACGTTGCCTCTGCACACCTGGCTATTGACTCCACGGCTGACCCTGAA GCTGTCCTGGCTGAAGCCTCATCCCGGCTCTATTCCCGGTTTGGATTCTCCAGCTGCACCCTGCAGGTGG AGCAATACCAGCCTGAGATGGCCCAGTGTCTGCGCTGCCAGGAGCCCTCCCAAGCCTGAGCCTCAGCCCC ACCCTCACCCCACTGCCAGGCCCAGGCTCTCGCCTGGACTCTCAGCACCTGCCTCCCAGATCAGAAGGGA CCTCTCTCTCTCTCCATCTTCCACCTGCCAAAAGCCCTAGCCCATGCCCTGGTGGCCAAGACCAAAGTGT ATATGAAGGCAATGGGGGGAGGGGAGGCTCAGATTGAATAGCTGTAAGCAGTTCAGGGCTGTGGGGCGTG TGGAAGCCCTGCCATCCATGCTCCACATGGAGAGTCATGCTTGTCCCTCTACGATTCATGTGTCCCTGTG GCAGGCTGGCTGGCTAGCTGGGGACATCTGCCTGTCTGTGTGCTGTTTATGTGTGCCTGTGCCTGGGGAG GTCATCAGGGGCCCCCCTCCCCATGTGACCCTTGCTCTGTCTATGCAGCGGCCCCAAAGCCTGCACTTTG TTTGTGTGCCCTAGTCCTGTGGTTTTGTCTGTTGTGAATGTGTGTTCTTTGGTGCTGTGGCCTGTGTGTC CCTGTGCCTGTGTAGCTGTGCTGGTTTGTGAGTCTGCTCCACCTGTGTGTCCATATGGGATCTGTCTGTC CATCCCTGTGTTGGTGCTGTGTCCTCAGCTTTCCCCAAGGGAGAGGGAGGACTCCACTGCAGCTCCACAA ATAAAAAAAAAAAAAAA
Notes:	The probe template was PCR amplified from E14.5 mouse embryo cDNA using gene specific primers. .
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EurExpress:euxassay_019721 same experiment
	EMAGE:10829 same embryo
	EMAGE:10828 same embryo
	EMAGE:10833 same embryo
	EMAGE:10832 same embryo
	EMAGE:10831 same embryo
	EMAGE:10830 same embryo
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source