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EMAGE:31695

Tmem38a ( MGI:1921416)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:31695 EMAGE:31695 EMAGE:31695 EMAGE:31695 EMAGE:31695
euxassay_002637_01 euxassay_002637_02 euxassay_002637_03 euxassay_002637_04 euxassay_002637_05
EMAGE:31695 EMAGE:31695 EMAGE:31695 EMAGE:31695 EMAGE:31695
euxassay_002637_06 euxassay_002637_07 euxassay_002637_08 euxassay_002637_09 euxassay_002637_10
EMAGE:31695 EMAGE:31695 EMAGE:31695 EMAGE:31695 EMAGE:31695
euxassay_002637_11 euxassay_002637_12 euxassay_002637_13 euxassay_002637_14 euxassay_002637_15
EMAGE:31695 EMAGE:31695 EMAGE:31695 EMAGE:31695 EMAGE:31695
euxassay_002637_16 euxassay_002637_17 euxassay_002637_18 euxassay_002637_19 euxassay_002637_20
EMAGE:31695 EMAGE:31695
euxassay_002637_21 euxassay_002637_22

View assay images: EMAGE genex expression entry
Expression pattern clarity: one star
Expression Pattern Description
Text Annotation:
StructureLevelPatternNotes
vertebral axis musculature
strong strong
regionalstrong expression: see section 01 02 03 04 05 06 07 08 09 10 11 13 14 15 16 17 18 19 20 21 22
head mesenchyme
strong strong
regionalstrong expression: see section 01 02 03 04 20 21 moderate expression: see section 05 06 17 18 22
tongue
moderate moderate
regionalmoderate expression: see section 10 11 12 13 weak expression: see section 14
Annotation Validation: text annotation by author
Detection Reagent
Type:in situ hybridisation probe
Identifier:T5268
Entity Detected:Tmem38a, ( MGI:1921416)
Sequence:sense strand is shown

>T5268
CATGGACCTGATGTCAGCGCTGAGCCTGGGCGAGCTAGCGCTCAGCTTCTCGCGGGTGCCGCTCTTCCCT
GTTTTCGACCTCAGCTACTTCATCGTCTCCATCATCTACCTGAAGTATGAGCCAGGAGCTGTGGAGCTGT
CCCGGCGCCACCCTGTGGCGTCCTGGCTGTGTGCCATGTTGCACTGTTTTGGGAGTTACATCCTGGCCGA
CCTGCTTCTTGGGGAGCCCATCATTGACTACTTCAGCAACAGCTCCAGTATCCTGCTGGCCTCTGGAGTG
TGGTACTTGATTTTCTTCTGTCCCTTGGACCTCTTCTACAAGTGTGTCTGCTTTCTGCCCGTAAAACTCA
TCTTTGTGGCTATGAAGGAGGTGGTGAGGGTCCGAAAGATCGCTGTGGGCATCCATCACGCACACCACCA
CTACCACCACGGGTGGTTCATCATGATCGCCACCGGGTGGGTCAAAGGGTCTGGTGTTGCCCTCCTGTCC
AACGTGGAACAGTTGCTTCGAGGTGTCTGGAAGCCAGAAACTAATGAGATCCTGCACATGTCCTTCCCCA
CCAAGGCCAGTCTGTATGGAGCCATCCTGTTCACCTTGCAGCAGACTCGCTGGCTCCCAGTGTCCAAGGC
CAGCCTCATTTTCGTCTTCACCATGTTTATGGTGTCATGTAAGGTGTTCCTGACAGCCACACACTCCCAC
AGTTCTCCATTTGATATCCTGGAGGGTTACATCTGCCCAGTGCTGTTTGGGGCAACTTGGGGAGGCGACC
ATCACCATGACAACCATGGAGCACCACATGGCATGGGACTAGGCACCCAGCACTCCGGCCTGCCTGCCAA
GGCCAAGGAAGAGCTGGGCGAAGGATCCAGGAAGAAGAAGACCAAGAAAGCGGATTAGGGGTTGGCCCCA
GGAATCCACTGCGTGCTTGGTAGAAGGATGTGGACTCAAAGAAACTCAGAACTTAGGGGCATTCAGGGCT
CAGACCCTCCCCTCCCCCCGCCCTGCTCTCTACCACCCTCAACTTCCCCATCTGCAGTTTGGAGCCATCA
GCAATTCCAAGGGCTGATGTGGGCTAAATTAGTGTGGAGGAATTCAACAGATGTGGAAAACCCTGCCCTC
TGCCAGACCCCTCAAAAGGTCACAGCCTTTGGGGGCACACAGTCTAGGCCCAAAGCCCTGGCTGGTAGGC
TCTTGGTTTTCATTCTGTGTTCTGTCTAATTATATCTTGTAACTAAAAGAATTTAAAGCCACATGGAGAC
TCAATTATCTAGATCCTCTCGAGAGCCAGGTGCTGGGGTCCCATGTCCTTCCGCACTCAGGACCTCCCTA
GAATTTTGTGACTCCTGCTGGACATCTTTAGGCAAATGGCCTTCCTTCTCTGAGCCTTCTGTTTCTGTTC
TGTAGCATGGAGACCCCAGGTCCTCCTGTGTACAAAAGGGTCTTTATAATTTCAAGCAGTTGCTTAAGCA
GCGTGCTAGTGAGAAGGAGACTGGAGCAGCATGAAGGACAGTGGCAGGCTGCTTGGTATGTAGGCCATTT
GTGTTTGAGGCCAGAAGGTCTCACCAGATACTCAGCTGAGCATGAGCAGGCACATTTAGGGCAGACTGCT
AACAGGAGGGGGGCTTGAGTTCCTAGGTGCCCACAGGTAAGAGGTGTGGGTGCAGAGCAGAGGGTCCAAG
AGCCAACAGCCTTGGTTCCTCACAATTGGGCTCTGGGTGTATCAGGTGTCCCTCATGCCTGATCAGCATA
GTTCATTCAGTCATTCAACAAACACACAGATCCACACATGCTCGCTATACAGTGTCATGCTGCTCCTCTT
AGGAGCGAGCCTTATACAGGGGAAGGGCCATGGTCGCCAAAGTCTCCAGGGCACCTGAGAGAGGTGAGCA
TGGGGTCCTGCTGGTCTCAGGCTTATGTGAGGCTCAGATCTAGTTGAAGTACCCAGTGTAGCCCATTTGT
TGAGAAAATGCTACTCATAACTTTGCCTGGAGGTAGGGTAGGCCCTGAGGCTGGAAGCTCCCGAGTTTCA
TCCCCTTGATGTCAGTCAAAGCTCAGTGTGAGTGATCAGCCAATAAATCTGGTGCGAGTAAATCAAAAAA
AAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:5360106 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZ. T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:5360106 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EurExpress:euxassay_002637 same experiment
 EMAGE:31659 same embryo
 EMAGE:31686 same embryo
 EMAGE:29689 same embryo
 EMAGE:29634 same embryo
 EMAGE:29633 same embryo
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS