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EMAGE:6841

1110059E24Rik RIKEN cDNA 1110059E24 gene ( MGI:1913456)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:6841 EMAGE:6841 EMAGE:6841 EMAGE:6841 EMAGE:6841
"Pseudo-wholemount" of euxassay_002642. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_002642_01 euxassay_002642_02 euxassay_002642_03 euxassay_002642_04
EMAGE:6841 EMAGE:6841 EMAGE:6841 EMAGE:6841 EMAGE:6841
euxassay_002642_05 euxassay_002642_06 euxassay_002642_07 euxassay_002642_08 euxassay_002642_09
EMAGE:6841 EMAGE:6841 EMAGE:6841 EMAGE:6841 EMAGE:6841
euxassay_002642_10 euxassay_002642_11 euxassay_002642_12 euxassay_002642_13 euxassay_002642_14
EMAGE:6841 EMAGE:6841 EMAGE:6841 EMAGE:6841 EMAGE:6841
euxassay_002642_15 euxassay_002642_16 euxassay_002642_17 euxassay_002642_18 euxassay_002642_19
EMAGE:6841
euxassay_002642_20

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:6841Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
6841_wholemount_strong.wlz
6841_wholemount_moderate.wlz
6841_wholemount_weak.wlz
6841_wholemount_possible.wlz
6841_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:6841_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T5032
Entity Detected:1110059E24Rik, RIKEN cDNA 1110059E24 gene ( MGI:1913456)
Sequence:sense strand is shown

>T5032
CTCAATCTGGGGCGGGAACGTCTTTACTCTTTCCTGTAACTTAAAGGCTGCACCGATTTACAGTGCTTGA
GATTTTGGTGATGAGTTCCCAGAAAGGCAACGTGACTCGGTCCCGGCCTCAGAAGCACCAGAATACGTTC
ACCTTCAAAAATGACAAGTTTGATAAGAGTGTTCAGACCAAGAAAATTAATGCAAAACTTCATGATGGAG
TATGTCAGCGCTGCAAAGAAGTTCTTGAGTGGCGTGTAAAGTACAGCAAATACAAGCCACTGTCAAAGCC
TAAGAAGTGTGTTAAATGTTTACAAAAGACAGTAAAGGACTCTTACCACATAATGTGTAGACCATGTGCC
TGTGAACTTGAAGTTTGTGCCAAATGTGGAAAGAAAGAAGAGATCGTTATTCCGTTTAATAAAGAACCAG
ACGCTCCAGAAAACACTGAAAATGAAGGTTCTGGCCATAGAAGGCGCTGCGGACGGAAGGAAGACAGTGA
TGAGGACTTAGACGCTGAGTCTGACTCGGATGGCGAGGATGGAGACACTCAGGCCTGACAACACCAAGTC
AATTGCAGAGGGAGTCAGAAGAGGCTCATGAGCAACATTGGTTATTTATAACATTTGAGTAACAGAATCT
TAAAGGTTTTCACAGTAACACTTAAGCTGTATATACAGAATATGTGTGGGCACACCATGGCATGTTGTAT
AAAACCTATAGAAATTGTTTAGAAAAACATTATGTCAAATTATTCAGTGTTGAGAGTTGGTGACTGCATC
AGCACTATCCATGGAAAACTAAGATGACTAGCTCAGCGTACATGTCTGTAACCTGACCTCGGGTATGTGA
CTCGTTAGCAAGAGCCCCCTTACATCGCACAAAGCAAAACAGCTTATTTTTATACACACTACACACACGT
ACAATCATGTGTAATGATTTTCCTTCAAAAATGTTTTTATATGCTTCATTCCATTTTTTTAACCTTCTCC
TAGTTTGGAAATATACACTTAGAAAAATGTGTAGACTGTATAGTTACTGTCTAGAAAGGAAAACCCAACC
TTCATACTGGAGTGGAGATACTTACAGTATCAGAAGCTCTTGTGAAGTTCTCCCTCGAAAGGTTATCCTT
CCCAGAATTCCATCCTCCGGAATTATCACTTTATTGCCAGTGTTTTCACCTGTAAACAGTGTAAGTTAGT
GTCACGTGATTATTGAAGTCTGTGTCCTTGGGTTTAAAACCCTAGAGCCACAGAATAGTGGCCAGGTGAT
ATGATGGGCTTTTCCACACTCTAGCTAGAGTCATAATTTCAATGTTTTACTGTGTTTTCTGTGTGTCTTA
ATCTCTACAAATGTATATATTACACACATGTGCATGTACATATGTATGTGTATATTTGCTGAGCCATTGA
AATAAATGGGAAGCTGTGGTTTTGCAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:5253886 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:5253886 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:6836 same embryo
 EMAGE:6837 same embryo
 EMAGE:6840 same embryo
 EMAGE:6839 same embryo
 EMAGE:6838 same embryo
 EurExpress:euxassay_002642 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS