EMAGE mouse gene expression spatial database

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EMAGE:7086

Foxred1 FAD-dependent oxidoreductase domain containing 1 ( MGI:2446262)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_002616. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_002616_01	euxassay_002616_02	euxassay_002616_03	euxassay_002616_04

euxassay_002616_05	euxassay_002616_06	euxassay_002616_07	euxassay_002616_08	euxassay_002616_09

euxassay_002616_10	euxassay_002616_11	euxassay_002616_12	euxassay_002616_13	euxassay_002616_14

euxassay_002616_15	euxassay_002616_16	euxassay_002616_17	euxassay_002616_18	euxassay_002616_19

euxassay_002616_20	euxassay_002616_21	euxassay_002616_22	euxassay_002616_23	euxassay_002616_24

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

7086_wholemount_strong.wlz

7086_wholemount_moderate.wlz

7086_wholemount_weak.wlz

7086_wholemount_possible.wlz

7086_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:7086_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Annotation Validation:

spatial mapping by EMAGE editor

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T5280
Entity Detected:	Foxred1, FAD-dependent oxidoreductase domain containing 1 ( MGI:2446262)
Sequence:	sense strand is shown >T5280 CACCTCAAGCTGAAAGAAGCCGGGCTCTAAGGCCATGTTTCGCAGAGCGCTGCGTCTTGGCTTGGGCCCG GGCCTCCCATACCGGGGGCTACGCACACGCAAAGGAGGCTTTACTCTGGACTGGGATGCAAAGGTGTCTG ACTTTAAGAAGAAGGTTGATTCCATCCTGCCTGGAAAGAAATATGAAGTGCTGTATGACACCAGCCACCT GCCCCCAGAACAGGCGGATGTGGTCATCATAGGAGGTGGGATTCTTGGTCTGTCTGTGGCCTTTTGGCTG AAGAAGCTGGAGAGTAGAAGAGGTGCCATTCGGGTGCTGGTGGTGGAGCAGGACCACACGTATTCACGGG CTTCCTCCACAGGGCCTTCTGTGGGCGGGATTTGGCAGCAGTTTTCCGTGCCTGAGAATGTCCAGCTCTC ACTCTTTTCAATCAACTTTCTCCGGAACATAAATGAGTACCTGGCTGTGGTGGATGCTCCTCCTGTGGAA CTTCAGTTCAACCCTTCCGGCTGTCTCTTGCTAGCTTCAGAAAAGGATGCTGCCACCTTGGAAAACAATG TGAAAATGCAAAGGCAGGAAGGAGCCAAAGTCTGCCTGATGTCTCCTGAGCAGCTGCAGACCAAGTTTCC CTGGATAAACGTAGAAGGAGTAGCTCTGGCGTCTTATGGGTTGGAGGATGAAGGTTGGTTTGATGCCTGG TCTTTGCTCCAGGGTCTTCGTCGAAAGGTCCAGTCAATGGGAGTCTTTTTCTGCCAGGGAGAGGTGACAC GTTTCATCACTTCATCTACCCCAATGAAGACCCCAACTGGGGAACATGTAGTCTTGAGAAGGATCAACAA TGTCCATGTGAAAATGGACAAGAGCCTGGAGTATCAACCAGTAGAATGTGCTGTAGTGATCAATGCTGCA GGAGCCTGGTCTGGGAAAATTGCAGAGCTGGCTGGTGTTGGGAAGGGACTTCCTGGCACCCTCCAGGGCA CCAAGCTACCTGTGGAGCCAAGGAAAAGGTATGTGCACTTATGGCACTGCCCACAGGGACCAGGTCTGGA GACACCGTTGGTTGCAGACATTAGTGGAGTCTATTTCCGACGGGAAGGATTGGGCAGCAACTACCTAGGT GGCTGTAGTCCTACTGAGGAGGAAGAACCAGACCCAACAAATCTGAATGTGGACCATGACTTCTTCCAGA ACAAAGTGTGGCCTCATTTGGTCCAGAGGGTGCCATCTTTTAAGACTCTGGAGCATCTTTTGCACCTGCA GGTACAGAGTGCCTGGGCTGGTTATTATGACTACAATACTTTTGACCAGAATGGCGTGGTGGGCCCCCAC CCACTAGTTGTCAACATGTACTTTGCTACGGGCTTCAGTGGTCGTGGGCTTCAGCATGCACCTGGCATCG GACGCGCTGTGGCAGAAATCATGCTAGAGGGTCACTTTAAGACCATCGACATGAGCCCCTTCCTCTTTAC CCGCTTTTACTTAGGAGAGAAGTTACAGGAGTACAATATCCTCTGAGTGTGAAAACTGTCTCTGGGCCTC ACCAGCCCAGGCATCACTCTGTCTCACGCTGGCTTTGGTCACTGTCTGAGTCTCCCCAGCACTGTGCCAG GGATACATCCCTTTCTTCACCATCCCTTAAACCAGGCCTCTTCCCCGGTGTCTCTGGACATGGAATGAGC ATAGGCACAAAGACCCAGACCAGTGGAAAGTGATGAAGTGGGAGCCTAGGACTGATTGTAGCCTAGGCTG CTTCACTACCTAAACAGTTCAGCTGGCATCCCAGGCATGGTGCCCAGGACTGGCCTCCTTCCTGGTGCTG ATGCAGAGAAATCTGACCAGAGCCAAGGCACAGAACATTCTAGGATAACCTGGCCCAAATTTATTGACTT GTCTATTAACCTGTTCTTTAATCTGGCCTTATGTTCTTCCTACTTTTCTTCTCATGGTAGAAGCTTTTGA AGTATTGTGCCATTAAAAAGGCAGCTTTGGGGGCTGGAGAGATGGTTAAGAGCACTGACTGCTCTTCCAG AGGTGCTGAGTTCAGTTCCTAGCAACCACATGGTGGCTCACAACCAACCATCTGTAATGGAATCTGATAC CCTCTTCTACTCTGTCTGAAGACAGTGACAATGTACTCACATACATAAAATAAATAAATCTTAAAAAAAA AAAAAAA
Notes:	The probe template was PCR amplified from IMAGE:5361053 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:5361053 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:7087 same embryo
	EMAGE:7085 same embryo
	EMAGE:7084 same embryo
	EMAGE:7083 same embryo
	EurExpress:euxassay_002616 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source