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EMAGE:7115

Tmem222 transmembrane protein 222 ( MGI:1098568)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:7115 EMAGE:7115 EMAGE:7115 EMAGE:7115 EMAGE:7115
"Pseudo-wholemount" of euxassay_002595. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_002595_01 euxassay_002595_02 euxassay_002595_03 euxassay_002595_04
EMAGE:7115 EMAGE:7115 EMAGE:7115 EMAGE:7115 EMAGE:7115
euxassay_002595_05 euxassay_002595_06 euxassay_002595_07 euxassay_002595_08 euxassay_002595_09
EMAGE:7115 EMAGE:7115 EMAGE:7115 EMAGE:7115 EMAGE:7115
euxassay_002595_10 euxassay_002595_11 euxassay_002595_12 euxassay_002595_13 euxassay_002595_14
EMAGE:7115 EMAGE:7115 EMAGE:7115 EMAGE:7115 EMAGE:7115
euxassay_002595_15 euxassay_002595_16 euxassay_002595_17 euxassay_002595_18 euxassay_002595_19
EMAGE:7115 EMAGE:7115 EMAGE:7115 EMAGE:7115
euxassay_002595_20 euxassay_002595_21 euxassay_002595_22 euxassay_002595_23

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:7115Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
7115_wholemount_strong.wlz
7115_wholemount_moderate.wlz
7115_wholemount_weak.wlz
7115_wholemount_possible.wlz
7115_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:7115_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T5228
Entity Detected:Tmem222, transmembrane protein 222 ( MGI:1098568)
Sequence:sense strand is shown

>T5228
CCACGCGTCCGGCGGGACGCGCGCGGGATGGCGGAAGCGGAAGGGAGTTCTCCGCTTCTGTTACAGCCGC
CGCCGCCCCCTCCTCGGATGGCGGAAGTAGAAACGCCGACGGGGGCCGAGACGGACATGAAGCAGTACCA
CGGGTCCGGTGGCGTTGTCATGGACGTGGAGCGGAGCCGCTTCCCCTACTGCGTGGTGTGGACACCCATC
CCGGTGCTCACGTGGTTTTTCCCCATCATTGGCCACATGGGCATCTGCACATCTGCAGGGGTCATTCGTG
ACTTCGCTGGCCCCTATTTTGTTTCGGAAGACAACATGGCCTTCGGAAAGCCTGCCAAGTTCTGGAAATT
GGACCCCGGACAGGTGTATGCGAGTGGGCCCAATGCATGGGACACGGCTGTGCACGATGCCTCCGAAGAG
TATAAGCACCGAATGCACAATCTCTGCTGTGACAACTGCCACTCCCACGTGGCTTTAGCCCTGAACCTGA
TGCGTTACAACAACAGCACCAACTGGAACATGGTGACGCTCTGCTGCTTCTGCCTCATTTATGGGAAGTA
TGTCAGTGTTGGAGCCTTTGTGAAGACCTGGCTGCCCTTTGTCCTTCTCCTCGGCATTATCCTGACCGTC
AGTCTCGTCTTCAATCTGCGGTGATAGCTTTCAGATGGTCTAAGCCTCAAGGAGGCTCCTGACACTCACC
CCTTTTGGTCCCAATTCTTTTATTCCCCACCCCTCAGGCAGTGTTGCCTCCTGGGTTGAAGTAGGGTCAG
GACTTGGGACAGAAGTGCCGATACTGAGCACCTGATGAGGTCACTTAGAGCCTCCTTGTCCTTTCTCCCT
GGGCCTGAGACCTCACCCTTGTGGCATTCCCAGTGCCATCCTGGGAAGGCCTTCCTTCCCTTAGAGCATT
TCCTGCCACCATCACTGGGCTACTCTTCCCATGCCCAGGGCACAGTGAGGACAAGAACCCACGGGCAAAG
CAGTGTTCAGAGCTGGATTTGAAGCTGTTTGCTGGCTGGTGGTTGTGTCCCAAAGTAGGGCATGTGTTAT
GAGAAGTGCTGCACGCCAAGAGACTTGGAACCTTCTCTGCTGGCCTCGAATGGACCGGGAGGGCTGGCTA
TGTTCTTTCTGCCACACCAGCACAGTGTGTGCCTCATCACCGCTAATGTGGGCCCTGGCTAGCAAGGGCT
GAGCGCACTTACGTGCAGAGTGGGTCCTCTGTAAATTAGGTAACGTGAATCCCACTTGTTTCCAGCCCAG
GAGGCCTCGTGCTGGGGATAGAACCCTTTAGGTCCAAAATGTGAATAACTTGTCAGAGCAGCTGGTACCC
CTGATCGGCTGGGTCTGCTTCCGGTTGCTACAATGGGCCCTATGCAGCCTCCCCCTGGTCTGCAGGCTCC
TTTATAAGGGGCTCTGTATTAGTCAGGGTTCTCTAGAGTCACAGAACGTATGGATAGTCTCTAGATAATA
AAGGAATTTATTGATGACTTACAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:5356647 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:5356647 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:7117 same embryo
 EMAGE:7120 same embryo
 EMAGE:7116 same embryo
 EMAGE:7118 same embryo
 EMAGE:7119 same embryo
 EurExpress:euxassay_002595 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS