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EMAGE:7124

Ubxn6 UBX domain protein 6 ( MGI:1913780)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:7124 EMAGE:7124 EMAGE:7124 EMAGE:7124 EMAGE:7124
"Pseudo-wholemount" of euxassay_004540. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_004540_01 euxassay_004540_02 euxassay_004540_03 euxassay_004540_04
EMAGE:7124 EMAGE:7124 EMAGE:7124 EMAGE:7124 EMAGE:7124
euxassay_004540_05 euxassay_004540_06 euxassay_004540_07 euxassay_004540_08 euxassay_004540_09
EMAGE:7124 EMAGE:7124 EMAGE:7124 EMAGE:7124 EMAGE:7124
euxassay_004540_10 euxassay_004540_11 euxassay_004540_12 euxassay_004540_13 euxassay_004540_14
EMAGE:7124 EMAGE:7124 EMAGE:7124 EMAGE:7124 EMAGE:7124
euxassay_004540_15 euxassay_004540_16 euxassay_004540_17 euxassay_004540_18 euxassay_004540_19
EMAGE:7124 EMAGE:7124 EMAGE:7124
euxassay_004540_20 euxassay_004540_21 euxassay_004540_22

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:7124Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
7124_wholemount_strong.wlz
7124_wholemount_moderate.wlz
7124_wholemount_weak.wlz
7124_wholemount_possible.wlz
7124_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:7124_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T5790
Entity Detected:Ubxn6, UBX domain protein 6 ( MGI:1913780)
Sequence:sense strand is shown

>T5790
CCGCCTGCTCCTCATCCACCCGGGCCCTGCGCCCTCCGCCCTGCGGCCCAAGCCGCCGGGCCGCTGCCGC
CATGAAGAAGTTCTTCCAGGAAATCAAGGCTGACATCAAGTTCAAGAGCGCGGGGCCCGGCCAGAAGCTT
ACGGATTCCGCAGGGGAGAAGACCACCAAAGGAAAGTCACCACAGCTGGCCCTCCGGCAGCCCCGTCAGG
GCCCCACTGATGAGGCACAGATGGCTGCCGCTGCTGCCCTGGCCCGGCTGGAACAGAAACAGCCCCGAGC
CCGGGGCCCTACATCTCAGGACTCCATCCGGAACCAGGTGAGGAAGGAACTTCAGGCCGAAGCCACCTCC
AGCAACAATCCAGGAGCTCCTGGGACCAACTCGGTACCTGAGCCCAAGGAGGAAATCTCTCCCCATTTGG
CAGTGCCTGGTGTGTTCTTCATCTGTCCGCTCACAGGTGTCACCCTGAGGAGGGACCAGCGGGATGCCCA
CATCAAGCAGGCCATCCTGTCGCACTTTTCCACAGACCCCGTGGCTGCCTCCATCATGAAGATACATACA
TTCAATAGAGACCGGGACCGAGTGAAGCTGGGTGTGGATACTATCGCCAAATACCTGGACAACATCCATT
TACACCCAGAGGAAGAAAAATACCAGAAAATCAAACTGCAGAACAAGGTGTTCCAGGAGCGCATCAACTG
TCTCGAGGGAAGCCACGAGTTCTTTGAAGCCATTGGCTTCAAGAAGGTCACCCTACCTGTGCCGGATCAG
GAGGGCCAGGAGGAGTTCTACGTTCTGGGTGAGGATGCACGGGCGCAGCCGCAGAACCTGGCGCGGCACA
AGCAGCAGCTGTTGGATGCCGAGCCTGTGCGGGCCACTCTGGATCGGCAGCTCCGAGTCTTCCGCCCCTC
GGCTCTGGCCTCACATTTTGAACTCCCCTCAGATTTCTTCAGCCTTACAGCTGAGGAGGTGAAGCGGGAG
CAAAGGCTCAGGACAGAGGCGGTGGAGCGACTGAGCTCACTCAGGACCAAAGCCATGCGGGAGAAAGAGG
AGCAGCGGGAGCTTCGCAAGTATACCTATGCCCTTGTGCGCGTGCGCCTGCCAGATGGCTGTCTACTGCA
AGGGACCTTCTATGCCCGGGAGAAGCTATCCGCGCTCTTCCGATTTGTGCGCGAGGCGCTACAGAACGAC
TGGCTGCCCTTTGAGCTGAGGGCCTCCGGTGGACAGAAGCTGGAGGAGAACGAGGCCCTGGCCTTGAATG
AGTGTGGGCTGGTACCCTCTGCCCTGTTGACCTTCTCCTGGGATGCTTCAGTGTTGGAAGATATAAGGGC
AGCAGGAGCTGAGCCAGCAAAATCTGTCTTGAGGCCTGAGCTGCTTGCAGCCATCGAGCAACTCTCCTGA
ATAAATGCAGGCTTGGCCCACTGTGGCTCCAGTCTCATGCTGTTCCCAAACCCATTCCTTTCCCTGAGTC
CCCAGCAATAGGAAGGACAGTAGTAGCAGTAGAGTTGGAGACAAGGTCCTACCTCCTCTGTGGGCTGCAA
GGGACAGGCTTGTCCTGGCTTGCGGTGTGTGGAGCCTTAGCCCTCTGGTGCCATCTTGGAGTGCAGCACA
GGTGGAATGCACACAGGCTGTGGATGGAGACAGCTGGCAGCATGGAGCTGTAATTCCTAAGTTATAAACC
CCAAATAAACAGGCTATTTAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:2655935 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:2655935 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:7126 same embryo
 EMAGE:7125 same embryo
 EMAGE:7123 same embryo
 EMAGE:7122 same embryo
 EMAGE:7121 same embryo
 EurExpress:euxassay_004540 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS