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EMAGE:7125

Calr calreticulin ( MGI:88252)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:7125 EMAGE:7125 EMAGE:7125 EMAGE:7125 EMAGE:7125
euxassay_004520_01 euxassay_004520_02 euxassay_004520_03 euxassay_004520_04 euxassay_004520_05
EMAGE:7125 EMAGE:7125 EMAGE:7125 EMAGE:7125 EMAGE:7125
euxassay_004520_06 euxassay_004520_07 euxassay_004520_08 euxassay_004520_09 euxassay_004520_10
EMAGE:7125 EMAGE:7125 EMAGE:7125 EMAGE:7125 EMAGE:7125
euxassay_004520_11 euxassay_004520_12 euxassay_004520_13 euxassay_004520_14 euxassay_004520_15
EMAGE:7125 EMAGE:7125 EMAGE:7125 EMAGE:7125 EMAGE:7125
euxassay_004520_16 euxassay_004520_17 euxassay_004520_18 euxassay_004520_19 euxassay_004520_20
EMAGE:7125
euxassay_004520_21

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:7125Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
7125_wholemount_strong.wlz
7125_wholemount_moderate.wlz
7125_wholemount_weak.wlz
7125_wholemount_possible.wlz
7125_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:7125_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T5789
Entity Detected:Calr, calreticulin ( MGI:88252)
Sequence:sense strand is shown

>T5789
TAAAAGGCCTGTGTGCCGCCGCCCCCTCGGCCCGCCATGCTCCTTTCGGTGCCGCTCCTGCTTGGCCTCC
TCGGCCTGGCCGCCGCAGACCCTGCCATCTATTTCAAAGAGCAGTTCTTGGACGGAGATGCCTGGACCAA
CCGCTGGGTCGAATCCAAACATAAGTCCGATTTTGGCAAATTTGTCCTCAGTTCTGGCAAATTTTACGGG
GACCTGGAGAAGGATAAAGGGCTGCAGACAAGCCAAGATGCCCGATTTTACGCACTGTCCGCCAAATTCG
AACCCTTCAGCAATAAGGGCCAGACACTGGTGGTACAGTTCACGGTGAAGCATGAGCAGAATATCGACTG
TGGGGGCGGCTACGTGAAGCTGTTTCCGAGTGGCTTGGACCAGAAGGACATGCATGGAGACTCAGAATAT
AACATCATGTTTGGTCCGGACATCTGCGGTCCTGGCACCAAGAAGGTTCATGTCATCTTTAACTACAAGG
GCAAGAATGTGCTGATCAACAAGGATATCCGGTGTAAGGATGATGAATTCACACACCTATACACACTGAT
TGTGCGGCCAGACAACACCTATGAGGTGAAAATTGACAACAGCCAGGTGGAGTCAGGCTCCTTGGAGGAT
GATTGGGACTTTCTGCCACCCAAGAAGATAAAGGACCCTGATGCTGCCAAGCCGGAAGACTGGGATGAAC
GAGCCAAGATCGATGACCCCACAGATTCCAAGCCTGAGGACTGGGACAAGCCAGAGCACATCCCTGACCC
TGATGCTAAGAAGCCTGAGGACTGGGATGAAGAGATGGATGGAGAGTGGGAACCACCAGTGATTCAAAAT
CCTGAATACAAGGGCGAGTGGAAACCACGTCAAATTGACAACCCAGATTACAAGGGTACCTGGATACACC
CAGAAATTGACAACCCTGAATACTCCCCCGATGCAAATATCTATGCCTATGATAGTTTTGCTGTACTGGG
CCTAGATCTCTGGCAGGTCAAGTCCGGGACAATCTTTGACAATTTCCTCATCACCAATGATGAGGCCTAT
GCAGAGGAGTTTGGCAATGAGACGTGGGGTGTTACCAAGGCTGCAGAGAAGCAGATGAAGGACAAGCAGG
ATGAGGAGCAGAGGCTTAAGGAAGAAGAAGAGGACAAGAAGCGTAAAGAGGAAGAAGAAGCTGAGGATAA
AGAGGATGATGATGACAGAGATGAAGATGAGGATGAAGAAGATGAGAAGGAGGAAGATGAGGAAGAATCC
CCTGGCCAAGCCAAGGATGAGCTGTAGAGGCCACACCACCTGCCTTCAGGGCTGGACTGAGGCCTGAACA
CCCTGCCGCAGAGCTGGCTGCTCCCAATAATGTCTCTATGAGACTCAAGAACTTTTCATTTTTTCCAGGC
AGGTTCAGATCTGGGGTAGATTCTGATTTTGTTCCCCTGCCTCCCCCATTACCCCCCCCCTTTTTTTTTT
ACTGGTGTTTGTCTTTAATTCTCCTTCAGCCCTCATCTGGTTTCTCATTTTTGAATCAACATCTTTTCCT
TCTGTCCCTCCCTTTCTCCATCTTTTGGTCACTACCCTCCAACTCTAGGAACAGGGGTGTAGAGGAGAAG
CCCTAGGCTTGAGATTTCATCTGCTCTCCTTCCTGCATCTCAGAGGAGGGCAGGAGAAGGGGGTGGTGTT
TTCCCTCCCCCCGCACTGAGGAAGAATGGGGCTCTTCTCATCCCCTTTCTCCCTTGCCCCCAGGACTGGG
CCACTTGTGGGGCAGCCAGTTCTAGCACAGCTCACACTGAGAGTGTAAGAACTACAAACAAAATTTCTAT
TAAATTAAGTTTTGTGTCTTCAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:2655918 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:2655918 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:7126 same embryo
 EMAGE:7123 same embryo
 EMAGE:7124 same embryo
 EMAGE:7122 same embryo
 EMAGE:7121 same embryo
 EurExpress:euxassay_004520 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS