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EMAGE:7209

Tgoln1 trans-golgi network protein ( MGI:105080)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:7209 EMAGE:7209 EMAGE:7209 EMAGE:7209 EMAGE:7209
"Pseudo-wholemount" of euxassay_002727. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_002727_01 euxassay_002727_02 euxassay_002727_03 euxassay_002727_04
EMAGE:7209 EMAGE:7209 EMAGE:7209 EMAGE:7209 EMAGE:7209
euxassay_002727_05 euxassay_002727_06 euxassay_002727_07 euxassay_002727_08 euxassay_002727_09
EMAGE:7209 EMAGE:7209 EMAGE:7209 EMAGE:7209 EMAGE:7209
euxassay_002727_10 euxassay_002727_11 euxassay_002727_12 euxassay_002727_13 euxassay_002727_14
EMAGE:7209 EMAGE:7209 EMAGE:7209 EMAGE:7209 EMAGE:7209
euxassay_002727_15 euxassay_002727_16 euxassay_002727_17 euxassay_002727_18 euxassay_002727_19
EMAGE:7209 EMAGE:7209 EMAGE:7209 EMAGE:7209 EMAGE:7209
euxassay_002727_20 euxassay_002727_21 euxassay_002727_22 euxassay_002727_23 euxassay_002727_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:7209Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
7209_wholemount_strong.wlz
7209_wholemount_moderate.wlz
7209_wholemount_weak.wlz
7209_wholemount_possible.wlz
7209_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:7209_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T5900
Entity Detected:Tgoln1, trans-golgi network protein ( MGI:105080)
Sequence:sense strand is shown

>T5900
CGCAGACTGCAGGATGCGGTTCCAGGTTGCGTTGCTCCTGCTGAGTGTCGCGGTGGCGAGAGCTCTGCCG
TCCGTTTATAAGAGAGACGCCGACTCAGGTGACTCTCAGAATCCTCCGAATCAGCCTTCCAAACAGTCCT
CCACTCCCCTGCCTTCTTCTAACCAGGTAAAGACTACAAGGCCGACCGACGGTCAGGGGCAGAAGTCAGA
TAAAAAAGACCAGGACAAGACGACTTTGGCAGCAGTTTCCAGTAAGGCGGAATCTGGGCCGCGGACCGCC
GCGACCGATCACAGTTTGGGTGATTCCAGAAGGCAGCCCGAGAAAACGGATGCCGAGTTGAACGAAACTG
CGCGGCCCCTCTCACCAGTCAACCCCAAACTGGAAAAGTCTGATCAGAGCTCCACAGAAGATTCAGGCAA
GCCCACAGGAGGTAATTCTGGCAAGCCCACAGGAGGTGATTCTGGCAAGCCCACAGAAGCTGGTTCGAAT
AAGGCCACAGAAGATGATTCTGGCAAGTCCACGAAAGTTGATTTGGACAAGCCCACCTCCAAAATCTCCC
CAGATACGGAGACTTCGAAGACTGACAAAGTCCAGCCAACTGAAAAAGGACAAAAACCAACACTTACTTC
CAAAACTGAATCTGGGGAAACACTGGCAGGGGACTCTGACTTCTCTTTAAAGCCAGAGAAAGGAGATAAG
TCTTCAGAGCCTACTGAAGACGTGGAAACCAAGGAGATTGAAGAGGGTGACACAGAGCCGGAAGAAGGCT
CACCACTTGAAGAAGAGAATGAAAAGGTGCCGGGCCCTTCCTCCAGTGAGAACCAAGAGGGGACACTTAC
AGACTCTATGAAGAATGAGAAGGATGATCTTTATAAGGACAGTTCTGGAAACACCAGTGCAGAGAGCAGC
CACTTCTTTGCATATCTAGTGACCGCTGCTGTTCTTGTTGCTGTCCTCTATATTGCTTACCACAACAAAC
GAAAGATTATTGCTTTTGCTCTGGAAGGGAAAAGATCCAAAGTCACTCGGAGGCCAAAGGCCAGTGACTA
CCAACGTTTGAACCTAAAGCTTTGATCTTTACTTTGTCTGCAAGAACCGTGTCCTCCCTGCTGATTTGTT
CCCAATGAAGAGAAATGAAAAGACTGTGACCTCCTCTGGGGTTTGGTGGCAAGTCTGGGCTGGCAGAGAT
GGGATAGCTTCAGGTTTTGCACCGGCACTTTGATGACACTCTCCTCTGGTGATGTTTTATTTACTTTTGT
GTTCCTTGTATGCTGACGTGTTCCATCATCCTTTCTTCCTTGGAGTGCAAACGGAAGAAGCACATGGAAA
AATGGATGTGACCAAAGGAAGACCCCACCTTAGGCAGGCCACACAATGGACCACCTTTCCACAGCCTCTT
TATCTTTGCAACTCTAGGCGCAAACTGTAGAGAGGTGCTTTCTAGACAAGATGTAGATGGTTATGTGGGA
TACTGATGGGCAGAGATGGGGTTGAATACTTATTCTCTACAGAAGGCTCAGCTGCAAACCAAACTAGCAG
GTTAAAGAGTGTTAAAGTCTGGTCCATCTGATAGTCTGTATATTTCTCTGAAAGTTTGCATGCTAGTTGT
ACTAGCATAAAAGGGACTCGAGGCTTCTGAAAGTAAAATCACTGTTTGATGGGATTTTTTTAAAAAAATG
ATCATTGAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:3157708 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:3157708 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:7211 same embryo
 EMAGE:7213 same embryo
 EMAGE:7212 same embryo
 EMAGE:7208 same embryo
 EMAGE:7210 same embryo
 EurExpress:euxassay_002727 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS