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EMAGE:7229

Nsmce2 non-SMC element 2 homolog (MMS21, S. cerevisiae) ( MGI:1915751)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:7229 EMAGE:7229 EMAGE:7229 EMAGE:7229 EMAGE:7229
"Pseudo-wholemount" of euxassay_002708. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_002708_01 euxassay_002708_02 euxassay_002708_03 euxassay_002708_04
EMAGE:7229 EMAGE:7229 EMAGE:7229 EMAGE:7229 EMAGE:7229
euxassay_002708_05 euxassay_002708_06 euxassay_002708_07 euxassay_002708_08 euxassay_002708_09
EMAGE:7229 EMAGE:7229 EMAGE:7229 EMAGE:7229 EMAGE:7229
euxassay_002708_10 euxassay_002708_11 euxassay_002708_12 euxassay_002708_13 euxassay_002708_14
EMAGE:7229 EMAGE:7229 EMAGE:7229 EMAGE:7229 EMAGE:7229
euxassay_002708_15 euxassay_002708_16 euxassay_002708_17 euxassay_002708_18 euxassay_002708_19
EMAGE:7229 EMAGE:7229 EMAGE:7229 EMAGE:7229 EMAGE:7229
euxassay_002708_20 euxassay_002708_21 euxassay_002708_22 euxassay_002708_23 euxassay_002708_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:7229Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
7229_wholemount_strong.wlz
7229_wholemount_moderate.wlz
7229_wholemount_weak.wlz
7229_wholemount_possible.wlz
7229_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:7229_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: three stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T5869
Entity Detected:Nsmce2, non-SMC element 2 homolog (MMS21, S. cerevisiae) ( MGI:1915751)
Sequence:sense strand is shown

>T5869
GAGGAAAGGAGTCGGGGTCTGGGCGTGCGACGTTCGGCTAGATATCACCGAGCTAGGTGGGACAGCCAGG
TAACAATTTCAAGATGCCAGGACGGTCCAGTACAAGTTCAGGTTCTACCCGTTACATATCCTTCAGTGGC
ATAGAGTCAGCTCTCTCCTCCTTAAAAAACTTCCAATCCTGTATCAGCTCTGGAATGGACACAGTTTCTA
GTGTTGCCTTGGACCTTGTGGAGACTCAAACTGAAGTGAGTAGTGAGTACAGTATGGACAAGGCCATGGT
TGAGTTTGCTAAAATGGATCGAGAACTAAGCCATTATGTTAAGGCTGTGCAGTCTACAATCAATCATGTA
AAAGAAGAACGTCCAGAAAAAGTACCAGATTTAAAATTACTGGTAGAGAAGAAATTTTTGGCTTTACAGG
ATAAGAACTCTGATGCCGACTTTAAAGAGAATGAAAAGTTCGTGCAGTTCAAGCAACAGCTGAGGGAGCT
GAAGAAGCAATATGGTATTCATGCAGACAGAGAGAATGATCTGACAGAAGGAGTTGACGAAGATATGATT
GTGACCCAGAGCCAAACCAATTTCATCTGCCCCATAACACAGCTGGAAATGAAGAAGCCAGTGAAAAATA
AAATGTGTGGCCATACATACGAAGAGGAAGCCATTGTTCGCATGATTGAATCCAAGCATAAGAGGAAGAA
GAAGGCCTGTTGCCCCAAAATTGGCTGTAGCCACACAGACATGAGAATGTCAGATCTCATTCCGGATGAA
GCCCTGAGAAGGGCAATCGAGAGCCACAACAAGAAGAAAAAACGCCACTCCGAATAGGAGCAAGCCACCT
GCCCACAGGGATGTCAGCAGCCTACCTCCCCGCCAGCCACCAGAGAGTGAGGGATGCCAGCGATAGGCCT
GGCCAAGCAGCGCTGTTTGCGGTAACCCTTGAAGGCTAATTGTAATTGAAAGCATTTTTTAAGTTACACA
GTAAAAACACAAGTACATTATATTCTTTATTTTCAAGTGCTCTGAAATTTTAAATAAAACTTTGATAATC
CTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:3155917 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:3155917 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:7230 same embryo
 EMAGE:7226 same embryo
 EMAGE:7228 same embryo
 EMAGE:7225 same embryo
 EMAGE:7227 same embryo
 EurExpress:euxassay_002708 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS