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EMAGE:7295

1700123O20Rik RIKEN cDNA 1700123O20 gene ( MGI:1920893)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:7295 EMAGE:7295 EMAGE:7295 EMAGE:7295 EMAGE:7295
"Pseudo-wholemount" of euxassay_004380. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_004380_01 euxassay_004380_02 euxassay_004380_03 euxassay_004380_04
EMAGE:7295 EMAGE:7295 EMAGE:7295 EMAGE:7295 EMAGE:7295
euxassay_004380_05 euxassay_004380_06 euxassay_004380_07 euxassay_004380_08 euxassay_004380_09
EMAGE:7295 EMAGE:7295 EMAGE:7295 EMAGE:7295 EMAGE:7295
euxassay_004380_10 euxassay_004380_11 euxassay_004380_12 euxassay_004380_13 euxassay_004380_14
EMAGE:7295 EMAGE:7295 EMAGE:7295 EMAGE:7295 EMAGE:7295
euxassay_004380_15 euxassay_004380_16 euxassay_004380_17 euxassay_004380_18 euxassay_004380_19
EMAGE:7295 EMAGE:7295 EMAGE:7295
euxassay_004380_20 euxassay_004380_21 euxassay_004380_22

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:7295Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
7295_wholemount_strong.wlz
7295_wholemount_moderate.wlz
7295_wholemount_weak.wlz
7295_wholemount_possible.wlz
7295_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:7295_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T6394
Entity Detected:1700123O20Rik, RIKEN cDNA 1700123O20 gene ( MGI:1920893)
Sequence:sense strand is shown

>T6394
ATGGAAGAGGCTCGGAGAGTTGGAGCAGGAGCTGAAGGACTCTTGTGATCTCTGGGCGTCTTCCAAGGGG
AAAAGGAAGGATGTCACTGGAATCGTCTTCCACATCAGTGCCACCCTGCTTCCCTTCTGTGTTACCTTCA
GTGCCTGATGACATTGCCAGCTCTTCCCCTCCTCCAATGTCTTACATCACTTCCCAGGAGATGAAGTGTA
TTCTTCACTGGTTTGCCAGTTGGTCAGGTCCCCAGCGGGAACGTTTTCTACAGGACCTGGTCGCTAAGGC
AGTGCCGGGAAAGCTACAGCCACTGCTGGATGCTCTGGAGCAGCTCAGTATGTCTGCAGCAAATCGACCA
CCATGTATCTTTGAGTGTCAGCTACGTCTTTGGGATCAGTGGTTTCGAGGTTGGGCTGAGCAGGAGCGCA
ATGAATTTGTCAGGCAGCTGGAAGTCAATGAGCCAGATTTCGTGGCAAAGTTTTACCAAGCAGTGGCTGC
TACTGCTGGTAAGGACTGACAGGCATTCAAATCAAGAAGAGAATGACATGTGATCACACCATGACTGTAG
TGATGATTCAGTGCAAGTATGTCACTTAAAGATTCACCTGAACTGCCAGGGTAGTGGTCCGCCTTTTATT
CCAGCACCCAGGAGGCACCCTGGTCTACATAGCAAGTTCCAGGCCAGCCAGCACTACAAAGCGAGACCCT
GCCTTAAAAAAAAATTTTTTTTTGCATGAACTTCCTGTTGAAAGGCTAGCACTGTTTTTACCCTAGTGGT
ATGTCACCTGGACTGTCTCCCATTTTAGCAAATCTGATTATTTACCAGGAGATGTCTAAGTCTCAAGAAT
TTAATGACTGCTTTTGTTACTATAACTAAAGGGACCAGTATCTTGTAACTCAAGCCTACAGTGGGCCCAG
ATGGGGCTGTTTTGCCACATTTACTCAACTCTAGCATAATTATGTGATTTCCCCACTGCTGGATTTCCCA
GCGATGATTTAATAAAATTAAGGAAAATTGAGAGAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:3581864 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:3581864 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:7297 same embryo
 EMAGE:7292 same embryo
 EMAGE:7296 same embryo
 EMAGE:7293 same embryo
 EMAGE:7294 same embryo
 EurExpress:euxassay_004380 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS