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EMAGE:7517

Foxi2 forkhead box I2 ( MGI:3028075)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:7517
euxassay_004615_01

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:7517Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
7517_wholemount_possible.wlz
7517_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:7517_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T7676
Entity Detected:Foxi2, forkhead box I2 ( MGI:3028075)
Sequence:sense strand is shown

>T7676
AAGAGGTAATCCCCCATGCTCCCTCCTCCCCAATGGCATTTAAAGGGCCCAGGTCAGGAGTGTGAGGACA
GGGTGAATGGAGCTCCCATGAGCTTCAGCACGGAGCCACCTGCACCGGCCCAGGCCGGGGGAGAGCTGGA
CATGGCTGGGTTCTGCGACAGCCTGGGTTCCTGCTCAGTCCCGCACGGCCTGACCCGGGCCATCGCGCAT
CCCCCGAGCTACGGCCGAACGGATCTGAGCTCTGGCCGGCGCCTGTGGGTGAACTCGGCCGCGCTCAGCC
CGGCGCCCTACGCGACGGGACCAGGGCCGGCTCCATCCTACGCTGCAGCGACTCTCGCCGTCCCGGGTTC
GCTTCTTGGCGCTTCAGGCGGTCTGGCAGGCGCTGATCTCGCTTGGCTGAGCCTGTCCGGACAGCAGGAG
CTGCTGAGGCTGGTACGGCCGCCCTACTCCTACTCAGCACTGATCGCCATGGCCATCCAAAGCGCGCCGC
TACGCAGGTTGACGCTCAGCCAGATCTACCAGTATGTGGCGGGCAACTTCCCCTTCTACAAGCGCAGCAA
GGCGGGCTGGCAGAACTCCATCCGCCACAACCTGTCGCTCAATGATTGCTTCAAGAAGGTGCCCCGAGAT
GAGAACGATCCAGGAAAAGGCAATTATTGGACGCTGGATCCAAACTGTGAGAAGATGTTTGACAATGGGA
ACTTCCGAAGGAAGAGGAGACGGAGAGGAGAGACTAGCGAGGCCGCTGTGCCTGGAGCCAGCAGCCCAGA
GGGAACTGCACTGGAGCCCCGTGGCTCCACTCCCCAGGACCCACAGACCTCACCATCCCCGTCTGAGGCC
ACCACTACTTGCCTCTCGGGCTTCTCCACGGCCATGGGAGCCCTGGCCGGCGGCTTTGGCGCCCTCCCTG
ATGGTCTGGCCCATGACTTTTCTTTGCGAAGGCCACCACCAACCGCGGCTGCCCACAGCCCTCAGATTCC
TAACACCGCGCCAGGCTTCGCTCCGGGCCATCAGACAGGGGCTACAGGCTTTAGGATGGGGCACCTCATC
TACAGCCGGGATGGGACTGAAGTTTGAAGGAAAGCTAGAGACTGGCCAGGTGCTCTGTTCCAACATTGAG
CTAAGGTCCTGAATCAGTCCTTCCTGGGAGCCCCACAGGTGCTGCATAGGAAATGGCGGGGCTCCTGTGT
GGATTGGCTGAGGCAGGTTGAGCTTGCTGTGTTCTCATCAACCTGGGGAATATACCCTCTTCTTAAGCTG
GTTCTCTGCCTATAGATCCAGCTCTGGGCTCTCTGACAGAGCGCCCCAGAGAGCCTTCTTAAAGGGGTAA
TAGGTTCCTAAAGAAGCCTGTTGGTCTCCAGTCTCCAGAGAGATGTCTGGCAGCTGGTGAGAGGATGGGA
GGAAACTGGGCTGCAAGAGCATCCAGAGCGCCCTTCAGTGATTGGCCCCATCTCTGGCCCACCTGTTTCA
GGGCAGCTAGGGGATGGGATGGGGGTGCAGCATGAGGACAGGTGGCTGCCTTCCACCCTCATGAGATTGC
ACATTGAGGGGACTCTCATACTTAGGCAAGAGCTGTCTCAGCAGAGGGAGATCCCCGAGGACACCAGCTC
CCTCCCCTGTCACTGTGCTCCTGGCATCATCAGTGCTCCTGTTACAGAACCTCGCTGTCCCCAGACCACA
GAGAGGCTGGCACTTAGGAAACCCTGGGCAGCTTTGGGTTTGCCTTACTTGACCGCTGCTCCCACCCCCT
ACCCCCACCATCGCCATCACCGCCCACACTCACTAAAGCTCACCTGAGGCAGGTGGGTGACCACACCTGT
TTTTGGTTTCTCTCTACTCCTGCCCCCTCCCTTGCTGTGACTGCTCTCAGGCAGAATCCTGAGAACTTCC
TCCAGAATTTAACTCTCCAGCCTTTCCAAGCCTGTTTATATTCAGTGACTGGCTTTTGGACCTCTGTGCT
TTCAGGAGCTCCTTGAGGTCCCAGCTGTTATAAGTCTTTGTGTCACCTGGCATTTTCTGGGGACATGGAC
ACTGGCCATGGACCCATACTATGCCAGGACAGATGGGAGGAGTACTTTCCCTGGAAGAGAGCAGAGAGGG
AAGTCTTAAGCCAGACCAGTCTTGCCCTTTAGTGAGCCCAGCCCCACTTGCACCAACAGGGCAAGTCTGC
CTTGGACTATCTCCAATCTGCCTACTGGGAGAGCCATGGTCCTCTGAACCTGCGGTGCTCAGGATGCAGG
AATGGGGTCCTGCTCCCCAACCCTGCCTCCTGTTTGCTGCGTGTTGTTCCTACCTGGTGTGCTGTGGTTA
ACCAAGCTTACAGTCAACCCATACTCTCTTTCCAAATGTAATGCGATTTTTAAAATTCAGGAAAATATAA
ATTATTTAAAATATAAATAAAAAAGGTTTTTCGATTTGGGGGCATATTTTAATAGAATAACACACTAAAA
AGGAACATCCCACTTTTTATTCTATCTTTGCAAGAAAATTGGAAAGAAAGAAATAACTAGCTACAACAAG
AAGAAATACAGCGTAACTTTCGTCAGGGCTTCCACAAAGTTGGATACATCCAGGTGTCTTGGCTGTGTGG
CAGCTGCATCATGGAAATTGTGTTTGTTTTCTACTTCTGATGCTGGATTTTCTATTAAAATTAAGAAAAG
GAAAATAAAAAAAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:30434074 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:30434074 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:7521 same embryo
 EMAGE:7519 same embryo
 EMAGE:7522 same embryo
 EMAGE:7520 same embryo
 EMAGE:7518 same embryo
 EurExpress:euxassay_004615 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS