EMAGE mouse gene expression spatial database

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EMAGE:7622

Nup107 nucleoporin 107 ( MGI:2143854)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_004725. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_004725_01	euxassay_004725_02	euxassay_004725_03	euxassay_004725_04

euxassay_004725_05	euxassay_004725_06	euxassay_004725_07	euxassay_004725_08	euxassay_004725_09

euxassay_004725_10	euxassay_004725_11	euxassay_004725_12	euxassay_004725_13	euxassay_004725_14

euxassay_004725_15	euxassay_004725_16	euxassay_004725_17	euxassay_004725_18	euxassay_004725_19

euxassay_004725_20	euxassay_004725_21	euxassay_004725_22	euxassay_004725_23	euxassay_004725_24

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

7622_wholemount_strong.wlz

7622_wholemount_moderate.wlz

7622_wholemount_weak.wlz

7622_wholemount_possible.wlz

7622_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:7622_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Annotation Validation:

spatial mapping by EMAGE editor

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T8703
Entity Detected:	Nup107, nucleoporin 107 ( MGI:2143854)
Sequence:	sense strand is shown >T8703 AACGCGGCGGCCAGGCTGCAGTCAAAGAGTTGCAAGGTTCTAGGCGGAGACCGCTGAAGCCATGGACAGG AGTGGCTTCGGGGGGATGTCATCCCCTGTGATCCGGGATGCGGAGGTGACGAGGACTGCCCGGAAGCACA GTGCTCACAAAAGAGTTCTAATTCAGGCCAACCAAGAGGACAATTTTGGTACTGCTACACCAAGAAGCCA GATCATTCCTCGAACGCCAAGCTCCTTTCGACAGCCTTTTGTTACTCCATCGAGCCGAAGCCTACTGAGA CACCCGGATATTTCCTACATTCTTGGAACGGAAGGGAGGTCTCCCCGGCACACACAGTCTTCTGGGTACT TGGGAAATCTTTCTATGGTGACTAATCTTGATGACAGCAACTGGGCAGCTGCATTCTCATCCCAGCGTTT AGGGCTCTACACAAACACAGAGCATCATAGTATGACCGAGGATGTGAACCTAAGTACTGTCATGCTACGG GAAGACGACCCTGGAGAGGCTGCATCCATGAGCATGTTCTCTGATTTCCTGCACTCTTTCTTGAAGCACT CTTCAACCACAGTCTTTGATCTCGTAGAAGAATATGAAAATATTTGTGGTAGTCAGGTGAATATCCTCAG TAAAATAGTGAGCCGCGCAACGCCTGGACTGCAGAAGTTTTCCAAGACGGCCAGTATGCTCTGGCTTCTC CAACAGGAGATGGTCACATGGAGGCTGCTCGCCTCTTTGTACAGAGACAGAATACAGTCTTCATTAGAAG AGGAAAATATGTTTGCAATTGCTGGTATTAATGCCAGCGAGAAGATGGTTGTGGAAACGCTGTTTCAGAG GGACTCACTGGTCCGGCAGAGCCAGTTGGTGGTAGATTGGCTAGAGAGTATTGCCAAAGATGAAATCGGA GAATTCTCGGACAATATTGAGTTTTATGCAAAATCAGTGTATTGGGAAAATACCCTCCACTCCTTAAAGC AGCGGCAGCTACTGTCTCACATGGGAAGTACCCGGCCTCTGGTCACCGAACTGGACCCAGACGCTCCCAT TAGACAGAAGTTGCCACTCGACGATCTGGACAGAGAGGACGAGGTCAGACTGCTGAAGTACCTCTTCACG CTCATCCGTGCTGGCATGACAGAGGAGGCACAACGGCTCTGTAAACGGTGTGGGCAAGCATGGCGAGCTG CAACCCTGGAAGGCTGGAAACTGTACCATGACCCTAATGTTAATGGAGGGACAGAGCTAGAACCTGTTGA AGGGAATCCATATAGACGCATCTGGAAGATTAGTTGCTGGAGAATGGCTGAAGATGAACTTTTTAATAAA TATGAAAGAGCGATTTACGCGGCACTGAGTGGGAACCTTAAGCAGCTCCTTCCAGTCTGTGACACGTGGG AAGACACGGTGTGGGCCTACTTCCGGGTGATGGTGGATAGCCTGGTGGAGCAGGAGATTCGGACATCAGT AATGACGCAGGATGACAGTGAGGAGCTCCCTCGAGAGTACATGGAAGCCAATTGGACCTTAGAAAAAGTT TTTGAAGAACTTCAAGCCACTGATAAAAAGAGAGTTCTGGAGGAGAATCAAGAGCATTACCATATAGTTC AGAAATTCCTTATCCTGGGAGACGTTGATGGTTTGATGGATGAATTTAGCAAATGGCTGTCCAAGAGCGG AAGCAGTCTGCCCGGACACCTGCTCCGCTTCATGACACACCTCATTCTGTTTCTCCGCACCCTAGGCCTC CAGACCAAGGAAGAAGTTTCCATTGAAGTTCTAAAAACATATATACAGCTGTTAATAAGCGAGAAGCACA CAAGCCTCATAGCGTTCTATACCTGTCATCTGCCTCAAGACCTCGCCGTGGCCCAGTATGCCTTATTTTT GGAAGGTGTTACGGAATTTGAGCAGCGGCACCAGTGCCTAGAGCTGGCTAAGGAAGCAGACTTGGATGTT GCGACGATAACGAAAACTGTAGTTGAGAATATTTGCAAGAAAGATAATGGTGAATTTAGTCACCATGACC TGGCTCCATCCCTAGACACTGGCACTACTGAGGAGGACCGCCTGAAGATTGATGTGATCGACTGGCTCGT GTTTGACCCGGCACAGAGAGCGGAAGCCCTGAGGCAAGGCAACGCCATCATGAGGAAGTTCTTAGCATTA AAGAAACATGAAGCTGCAAAAGAAGTGTTTGTGAAAATTCCTCAGGATTCCATCGCAGAGATCTATAATC AGTGGGAGGAGCAAGGCATGGAGAGCCCTCTTCCTGCCGAGGATGATAACGCCATCCGAGAGCATTTGTG TATCAGAGCCTATCTGGAAGCCCATGAAACCTTCAACGAATGGTTTAAACATATGAATTCGGCTCCACAG AAACCTACATTACTATCTCAAGCAACTTTTACAGAGAAAGTGGCTTATGAACACAGAGAAAAGAAATACG AGATGGATCATAATATTTGGAAAGGACATTTGGATGCCCTAACTGCTGATGTGAAGGAGAAAATGTACAA CGTCTTGTTGTTTGTTGATGGAGGATGGATGGTGGATGTCAGAGAGGACGCCGAGGACGACCCTGAGCGG ACGCATCAGATGGTTTTACTGAGGAAGCTCTGTCTCCCCATGCTGTGCTTCCTGCTTCACACCATACTGC ACAGCACCGGACAGTACCAGGAGTGCCTGCAGCTGGCCGACATGGTGTCCTCTGAGCGCCACAAGCTCTA TCTGGTGTTTTCTAAGGAAGAACTAAGGAAACTGCTGCAGAAGTTAAGGGAGTCCTCTCTAATGCTCCTA GACCAGGGGCTCGACCCGCTTGGCTATGAAATTCAGTCATAACTCACCATTCTCTGATGCCCATGACTAG AGGAGGATGCTTGCTTGCTTCGTTGAGTTGCTTGGTTGGTTGGTTTTGGTCAAATATACGTATTTGTAAT TATTGGTTTGTTTGTTTGTTTGTTTTTCCTTTGGCATTCTTGGGGAAAATGTAAAATTCAGGCATTTGGA TTTTGTATTATATCAGTATTTCCTTATGTATTTTTTAAATAAATTATACAAAATAAATTTTTTGTTCTAT AAAAAAAAAAAAAAAAAAAAAA
Notes:	The probe template was PCR amplified from IMAGE:6402677 using vector (pYX-Asc) specific primers. Forward Primer - name:RZPD T3, sequence:ATTAACCCTCACTAAAGGGA; Reverse Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:6402677 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:7620 same embryo
	EMAGE:7624 same embryo
	EMAGE:7623 same embryo
	EMAGE:7621 same embryo
	EMAGE:7619 same embryo
	EurExpress:euxassay_004725 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source