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EMAGE:7771

Shroom2 shroom family member 2 ( MGI:107194)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:7771 EMAGE:7771 EMAGE:7771 EMAGE:7771 EMAGE:7771
"Pseudo-wholemount" of euxassay_007738. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_007738_01 euxassay_007738_02 euxassay_007738_03 euxassay_007738_04
EMAGE:7771 EMAGE:7771 EMAGE:7771 EMAGE:7771 EMAGE:7771
euxassay_007738_05 euxassay_007738_06 euxassay_007738_07 euxassay_007738_08 euxassay_007738_09
EMAGE:7771 EMAGE:7771 EMAGE:7771 EMAGE:7771 EMAGE:7771
euxassay_007738_10 euxassay_007738_11 euxassay_007738_12 euxassay_007738_13 euxassay_007738_14
EMAGE:7771 EMAGE:7771 EMAGE:7771 EMAGE:7771 EMAGE:7771
euxassay_007738_15 euxassay_007738_16 euxassay_007738_17 euxassay_007738_18 euxassay_007738_19
EMAGE:7771 EMAGE:7771 EMAGE:7771 EMAGE:7771 EMAGE:7771
euxassay_007738_20 euxassay_007738_21 euxassay_007738_22 euxassay_007738_23 euxassay_007738_24
EMAGE:7771
euxassay_007738_25

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:7771Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
7771_wholemount_strong.wlz
7771_wholemount_moderate.wlz
7771_wholemount_weak.wlz
7771_wholemount_possible.wlz
7771_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:7771_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T35941
Entity Detected:Shroom2, shroom family member 2 ( MGI:107194)
Sequence:sense strand is shown

>T35941
CGAAGATTTCCCTCTCTTAGCAGTAGCCACACCTTTTCCAAAATACACATGCACATTTACATCCATGTGT
ATGTGCACGTGTTCACACTCCCACACACAGTTGTCTTAAAGGACCAGAATCCATGCTTCTTGAGCCAGAG
GAACAGACGTTGACAGCAGAAGCTCTGGTGAAGATGATACAGTGTCCTCCATACAGCTGAGTCAAGATTG
GCGAGATTTTATATGCAGACCATGGATGACATGGTTGACATCCTATCACTGTCAGTCAGAAGAAAATCTT
TGCAAAAGTGTTGATTCCTGTTAAATGAAACTATTCTACCTTTTGAAGTTCCTGATCTGCCACTGCAGCC
TCTTTCTCCTTCCACTTGGTCATCCTTTGCTGTGAATGTGGGTCATGTCAGAAAACACGATATTGGCTCT
CCACAAACTATCCAAGGTGTTGCAGACTATTTTGTTTTTAATTTACACCAAGCTATTTACCTGTGGTTCT
TTAATCCCAAATACAGTGTTGTGAACATTTTAATGATATGTGTGTAACATGTGAGTAATGGAATTTTGTT
TGTCTGTAACCTGCTTTTTCATGTTGCTTCAAGCTTGTCTGTTATGGGAAACA
Notes:The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from wild type C57BL/6J mouse whole brain cDNA), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 86931. Forward Primer - name:086931_F_cDNA_Apxl, sequence:CGAAGATTTCCCTCTCTTAGCA; Reverse Primer - name:086931_N_SP6_cDNA_Apxl, sequence:TGTTTCCCATAACAGACAAGC. The reverse primer contains a 5' extension containing an Sp6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using Sp6 polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:7770 same embryo
 EMAGE:7773 same embryo
 EMAGE:7774 same embryo
 EMAGE:7769 same embryo
 EMAGE:7772 same embryo
 EurExpress:euxassay_007738 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS