EMAGE mouse gene expression spatial database

EMAGE:7773

Aox3 aldehyde oxidase 3 ( MGI:1918974)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_007657. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_007657_01	euxassay_007657_02	euxassay_007657_03	euxassay_007657_04

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Expression pattern clarity:
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Expression Pattern Description

Spatial Annotation:

Annotation colour key:

wholemount mapping

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Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

nasal cavity

moderate

regional

moderate expression: see section 11 15

Annotation Validation:

spatial mapping by EMAGE editor, text annotation by author

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T35935
Entity Detected:	Aox3, aldehyde oxidase 3 ( MGI:1918974)
Sequence:	sense strand is shown >T35935 GCCAGCCGTGAATTAAAGATACCTATGTCTTATATACACCTGGATGAGATGAGCACTGTGACCGTCCCCA ACACGGTTACCACTGGAGCATCCACCGGTGCCGATGTCAACGGGAGAGCTGTTCAGAATGCCTGTCAGAT CCTTATGAAGCGTCTGGAACCCATCATCAAGCAGAATCCTAGTGGTACCTGGGAAGAATGGGTTAAGGAA GCTTTTGTTCAAAGCATTACGCTCTCGGCCACTGGATATTTTAGGGGTTACCAAGCTGACATGGACTGGG AGAAGGGGAGAAAGGTGACATTTTTTCCCTATTTTGTTTTTGGAGCTGCCTGTTCTGAGGTTGAAATTGA TTGTCTGACGGGAGCTCACAAGAACATTAGAACCGACATTGTTATGGATGGATCATTCAGTATAAATCCT GCTGTGGACATAGGCCAGATTGAAGGGGCATTTGTTCAAGGTCTTGGACTGTATACTCTAGAGGAACTGA AATATTCACCTGAAGGAGTCCTATACACTCGTGGTCCACACCAGTACAAAATAGCATCAGTTACCGACAT CCCAGAAGAATTCCATGTATCACTGTTGACACCAACC
Notes:	The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from wild type C57BL/6J mouse whole brain cDNA), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 65500. Forward Primer - name:065500_F_cDNA_Aox3, sequence:GCCAGCCGTGAATTAAAGATAC; Reverse Primer - name:065500_N_SP6_cDNA_Aox3, sequence:GGTTGGTGTCAACAGTGATACAT. The reverse primer contains a 5' extension containing an Sp6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using Sp6 polymerase.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:7770 same embryo
	EMAGE:7774 same embryo
	EMAGE:7769 same embryo
	EMAGE:7772 same embryo
	EMAGE:7771 same embryo
	EurExpress:euxassay_007657 same experiment
	MGI:4823157 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source