EMAGE mouse gene expression spatial database

Quicksearch Help

(Click the icon to keep this page displayed.)

EMAGE:7811

Zswim3 zinc finger, SWIM domain containing 3 ( MGI:1914788)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_005336. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_005336_01	euxassay_005336_02	euxassay_005336_03	euxassay_005336_04

euxassay_005336_05	euxassay_005336_06	euxassay_005336_07	euxassay_005336_08	euxassay_005336_09

euxassay_005336_10	euxassay_005336_11	euxassay_005336_12	euxassay_005336_13	euxassay_005336_14

euxassay_005336_15	euxassay_005336_16	euxassay_005336_17	euxassay_005336_18	euxassay_005336_19

euxassay_005336_20	euxassay_005336_21	euxassay_005336_22	euxassay_005336_23	euxassay_005336_24

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

7811_wholemount_strong.wlz

7811_wholemount_moderate.wlz

7811_wholemount_weak.wlz

7811_wholemount_possible.wlz

7811_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:7811_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Annotation Validation:

spatial mapping by EMAGE editor

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T7019
Entity Detected:	Zswim3, zinc finger, SWIM domain containing 3 ( MGI:1914788)
Sequence:	sense strand is shown >T7019 GTCGCCCCTAGGTTGCTGTTACCGGTCTCCTCCTGTTCTGGGCTCCTCCCAAGCGCCCTGTAAGCCACTC ACTCGGGACCGCAGCTGGGCCCGTGCCAGCCGTTACCCAGTGACCTCTGACCCCTGCCGTGGTTCTAGGT TCTAGGAGGGCCAGTCCCCGGCCATGGAGCTAGGCAGCTGCTTTAAGACCTACGAGGACTTCAAGGAGTG TTTCAGCGCCTACAAAAAGGAGACCAGGTGCTCCTTCATTGTCAGGGACTGCATCTCCGTCCGCTTCCAT AACCTCAACAACGGCACCTCTTTCCGCGAGGATATCCTATATGTGCAGGTGAAATTTGTCTGTATTCGGA CGCAGTCAAACAGGAAGAAAACTCGGAAGGTGGACAGGTGTCCAGCGTATCTGCTGCTGCAATACAACGA GACTCTAGATAGACTGTTTATCAGTGAGTTGAATACCCAGCACATTCATGCTGACTCTAATGCTTCTGGA GGAATCCCTGCTAGCAAGCCTCAGGCAATATGTCTACACAAACTCCCGCCGGTGCAGCTCAGCATCAGGA AAGACCTTGATACAGCAGAGAAGCCCTCAGTAGAGCCGTCATTTTGCCTCGATAAGATACACAAGCCCTC AAATCCAGAACAGGAGGGCATCAGTCCTTCTGATATGGCCAAGATAGCAAAAGTGATGAAGAACTTTCTT ACCGTGGACGAGGGCTCAATGGCCTCCTTCAGTGTGGGCACCAGCCAAGACCTAGACCGACTCAGCTTCC AGAGCAGCAAGATGAGTGACCTGTTCGCCCGATTCCCAGAGACACTCTTGCTGCACCGGGTGGAAAACAG CCAGGGCCATATTCTGTATGCTTTCTTGGTGGAGAACAAGGAGCGAGAGAGTCGAGTGGTGCACTTCGCT GTGCTCAAGGCTGAGACAGCGCCTTCTGTGGCCAAGATGCTCAATATCTTTACAGAATTCAACTCTGATT GGCCCAAGGTCAAGATGGTCTTTGTGGACCCTTCATTCCCTCACCGAGCGATCTTACAGGAGATCTTCCC CTCTGCCCGCACTCTCCTCTCTATCTACCACACCACTCGTCTCTTGGAGAAGAAGTTACACCAGAGTTCA GTAAATGCGTCTTTTAAAAGGCTCATGAAAGAAGCTCTGCGGGAAGCTGTGTTTGTCTCTTCTGATGCAA GCCTAAAAAATCTCTGTGAGATGTCCCAAGTCCTACTAGATGAGGAACTCTTCAGTTTCCTCCAGGCCCA TTGGTTCTCCTGTGAACTGCTGTGGTACATACATGTGAGGAAGGGCCTGCATGCATGTAACACCTACATG GACAGCCTAGACATAGTCACCAGCAAGGTGTCAAGCCTCTTTCGGGAACAGCGGTCTCTGCTGGACTGCA TCCTTCACTTTGTGGATTACATAGACTTCTTTAATACCAAAGGTCTGAAGAGCTTGCCCACAAATGCTCC CAAGTTAAGGAGAACTCGGCTCCCAAGCACGCCTCCAAGGCCCAAGAAGCCTTTTAGAATTTGTGGTGGG GGTGACACCAGGCTCCCTGTGGAAGAGGTAGAAGAGACAAAGGCAGACTCAGCACAGTCTCAGTTGCCAC AGCCCCAGGATCAGTCCTCCAAGGCTGGCATGCTAGACATCTTGCACCAGAGTGGCTCTGAACTAGCCTA CAAGTTGTGTCATAATGAGTGGGAGGTGGTACAGAATTCCACCCACCTGGTAGACGAGGCCGGCTCCTCA GTGGCTGTTCAGCTGCTAGAGAACTCACACCAGGTGAGCAAAGATGGCTGTAGCTGCAGCTGCTCCTTTC AACAGTGCTACCATCTGCCATGCCGCCACATTTTGGCTCTGTTGCATACCAGCCAGCAGCCAGTAGGGGA AGCCATGGTGTGCTGCCGGTGGCAGAAGAAATACCAGCACCTCCTTGACCCCAATGGGGAGCTGCAAGAC CGTGGAATCATCCCAAACACAGATCAGCCTGAAAAGCAAGGTCAGAACCACATGATTCGGGACCTAAGCA GGGAGCTGGCAAACCTGCTGATGCAGACCGAGGGGCCAGAGCTGGAGGAGCGCTGCTCCACCCTGCGCAA GATTGTGGACATCTGGGCAGACCCCTATCAGCTGCCTGAGTCCAGTCAGCAGCCAGTTGACTTCAGAGAC GTGGGCTGCCTCCCTTTCCTCTGGGGAAAGCTAGAGGAAGCAGACAGCCCCCCTCTTGCTGAAGCCATGG TTCATGATTGAAGTGTTTGTACTAGTGAACCCATCTCAGAACCACCTTGGGACAGTTCAAAGTGGTGGGT CAGACTGTAGGTCAGTATTTTTATCAGTGTCTTCCTAGGTAAGGGCTAAGAAGATCTTAAAACTCGGGGG AGAGGGACTCCACTGTGACAATCCTTTGACCCTGCCTCATTTCAGCCCTACCTTTGGCGTTCTGTAGACA CCTTGTTCATTGTTCAAAGCCAAAGTTATTCCATATGAAAGGGCATGCTCCTTTCTTCCCAGCCTACACA GACGAACCCTTGCCCAGGTTAGGATAAACACAATGGGCCCGGAAAGGAGCTTTGTGTCCAGAGACAGAGG GGGAGGAGGGTAGCCCTTGATTGTCAACTGTTGCTGCTCTTTAGAAAATACCTGTTACGTATTTTTATTC ACACTAATAAAGTCGGTTTTTGTTTTGTTAAAAAAAAAAAAAAAAAAAAAA
Notes:	The probe template was PCR amplified from IMAGE:3993352 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:3993352 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:7812 same embryo
	EMAGE:7807 same embryo
	EMAGE:7810 same embryo
	EMAGE:7808 same embryo
	EMAGE:7809 same embryo
	EurExpress:euxassay_005336 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source