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EMAGE:8071

Trav3-3 T cell receptor alpha variable 3-3 ( MGI:3702145)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:8071 EMAGE:8071 EMAGE:8071 EMAGE:8071 EMAGE:8071
"Pseudo-wholemount" of euxassay_016018. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_016018_01 euxassay_016018_02 euxassay_016018_03 euxassay_016018_04
EMAGE:8071 EMAGE:8071 EMAGE:8071 EMAGE:8071 EMAGE:8071
euxassay_016018_05 euxassay_016018_06 euxassay_016018_07 euxassay_016018_08 euxassay_016018_09
EMAGE:8071 EMAGE:8071 EMAGE:8071 EMAGE:8071 EMAGE:8071
euxassay_016018_10 euxassay_016018_11 euxassay_016018_12 euxassay_016018_13 euxassay_016018_14
EMAGE:8071 EMAGE:8071 EMAGE:8071 EMAGE:8071 EMAGE:8071
euxassay_016018_15 euxassay_016018_16 euxassay_016018_17 euxassay_016018_18 euxassay_016018_19
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euxassay_016018_20 euxassay_016018_21 euxassay_016018_22

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:8071Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
8071_wholemount_strong.wlz
8071_wholemount_moderate.wlz
8071_wholemount_weak.wlz
8071_wholemount_possible.wlz
8071_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:8071_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T39724
Entity Detected:Trav3-3, T cell receptor alpha variable 3-3 ( MGI:3702145)
Sequence:sense strand is shown

>T39724
TCTCCAGCAGACTCTTCCCTACACCTGCTTTCAAGCTCTTGCTTTCCTCAGCTGCTTTCCTGCCTGTCCT
GTTCCAGAGTTTCTCCACAACAGAGCTGCAGCCTTCTCAAGGCTCAGTCATGCTCCTGGCGCTCCTCCCA
GTGCTGGGGATACACTTTCTCCTGAGAGATGCCCAAGCTCAGTCAGTGACGCAGCCCGATGCTCGCGTCA
CTGTCTCTGAAGGAGCCTCTCTGCAGCTGAGATGCAAGTATTCCTACTTTGGGACACCTTATCTGTTCTG
GTATGTCCAGTACCCGCGGCAGGGGCTGCAGCTGCTCCTCAAGTACTATCCAGGAGACCCAGTGGTTCAA
GGAGTGAATGGCTTTGAGGCTGAGTTCAGCAAGAGTAACTCTTCCTTCCACCTGCGGAAAGCCTCTGTGC
ACTGGAGCGACTGGGCTGTGTACTTCTGTGCTGTGAGCACACAGTGTGTGGGGCTGCAGGGGGAGCCGAA
CAAAAACACCGATGGCTGTGGTGCTCAGACTCAAGATCTCTCCTTGTGGTCTCTGGAACATCTCTTTCAA
CTTCGTGAGGAGAAATAGGAAGTTGCGCAGTACCAGCTGCCTTTGCAAGCTAAACCATCCACTATATCCA
ATTCTCAATTGTAGTTCTTTGGAATGGAGAAGATACAGTGTCTTGGGCTGTACAGGGAGCTGAACACAAA
CACCCATTTCAGGGGGTGCTCGGACCTGTGATTTCTCTCCTTAT
Notes:The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from wild type C57BL/6J mouse whole brain cDNA), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 69907. Forward Primer - name:069907_F_cDNA_A430107P09Rik, sequence:TCTCCAGCAGACTCTTCCCTAC; Reverse Primer - name:069907_N_SP6_cDNA_A430107P09Rik, sequence:ATAAGGAGAGAAATCACAGGTCC. The reverse primer contains a 5' extension containing an Sp6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using Sp6 polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:8070 same assay
 EMAGE:8075 same embryo
 EMAGE:8072 same embryo
 EMAGE:8074 same embryo
 EurExpress:euxassay_016018 same experiment
 EMAGE:8073 same embryo
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS