EMAGE mouse gene expression spatial database

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EMAGE:8201

Nkd1 naked cuticle 1 homolog (Drosophila) ( MGI:2135954)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_005331. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_005331_01	euxassay_005331_02	euxassay_005331_03	euxassay_005331_04

euxassay_005331_05	euxassay_005331_06	euxassay_005331_07	euxassay_005331_08	euxassay_005331_09

euxassay_005331_10	euxassay_005331_11	euxassay_005331_12	euxassay_005331_13	euxassay_005331_14

euxassay_005331_15	euxassay_005331_16	euxassay_005331_17	euxassay_005331_18	euxassay_005331_19

euxassay_005331_20	euxassay_005331_21	euxassay_005331_22	euxassay_005331_23

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

8201_wholemount_strong.wlz

8201_wholemount_moderate.wlz

8201_wholemount_weak.wlz

8201_wholemount_possible.wlz

8201_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:8201_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Annotation Validation:

spatial mapping by EMAGE editor

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T8294
Entity Detected:	Nkd1, naked cuticle 1 homolog (Drosophila) ( MGI:2135954)
Sequence:	sense strand is shown >T8294 CGACGGCGGCAGGAGCGCGTCCCGGCGCCGCCTAAGGCTGCGCTCGGCGCGCGGACTGTGAGGAGGAGGC GAGCGAGGCTGGCGCGGGGTCGGCGGCCGGACGCATGGCTTAGGACGCTCCGCCGCCGCGCCCCAGCATG GGGAAACTTCACTCGAAGCCGGCCGCCGTGTGCAAGCGCAGGGAGAGCCCGGAAGGTGACAGCTTTGCTG TAAGCGCTGCTTGGGCAAGGAAAGGCATCGAGGAGTGGATCGGGAGGCAGCGCTGTCCAGGCAGCGTCTC AGGACCCCGTCAGCTGAGATTGGCAGGCACTGTTGGTCGAGGCACTCGGGAACTCGTGGGTGACACTTCT AGAGAGGCTCTCGGTGAGGAGGACGAGGACGACTTCCCCCTAGAAGTGGCCCTGCCGCCTGAGAAGATTG ACAGCCTAGGTAGTGGAGATGAGAAGAGAATGGAGAGACTGAGCGAACCTGGCCAGGCCTCCAAGAAGCA GCTCAAGTTTGAAGAGCTGCAGTGTGATGTCTCTGTGGAGGAGGACAGCCGGCAAGAGTGGACTTTCACT CTATATGACTTCGACAACAATGGCAAAGTGACCCGTGAGGACATTACCAGCTTGCTGCATACCATCTATG AAGTGGTTGACTCCTCTGTGAACCATTCCCCCACATCAAGCAAGACACTGCGGGTGAAGCTCACCGTGGC TCCTGACGGGAGCCAGAGTAAGAGGAGCGTCCTTTTCAACCATACCGATCTGCAGAGCACAAGGCCCCGA GCAGACACCAAACCCGCTGAGGAGCTGCGTGGCTGGGAGAAGAAGCAGCGAGCCCCACTCAGGTTCCAGG GTGACAGCCACCTGGAGCAGCCAGACTGCTACCACCATTGCGTGGATGAGAACATTGAGAGGAGAAACCA CTACCTAGACCTGGCGGGGATAGAGAACTACACGTCTCAGTTTGGACCGGGATCCCCTTCGGTGGCCCAG AAGTCAGAGCTGCCCCCTCGAATCTCCAACCCCACTCGCTCTCGCTCCCACGAGCCAGAAGCTGCCCACG TCCCACACCGGAGGCCCCAAGGTGTGGACCCAGGCTCCTTCCACCTCCTTGACACCCCATTTGCCAAGGC ATCAGAGCTCCAGCAACGGCTCCGGGGCACTCAGGATGGGAGCAAGCACTTTGTGAGGTCCCCCAAGGCC CAGGGCAAGAACATGGGTATGGGCCACGGGGCCAGAGGTGCAAGAAGCAAGCCTCCACTGGTACCCACCA CCCATACTGTCTCCCCCTCTGCCCATCTGGCCACCAGCCCAGCCCTTCTCCCCACCCTGGCACCCCTGGG GCACAAGAAACACAAGCATCGAGCCAAGGAGAGCCAGGCGAGCTGCCGGGGCCTGCAGGGCCCCCTGGCT GCAGGAGGCTCCACCGTCATGGGGCGGGAGCAGGTGAGGGAGCTGCCTGCCGTGGTGGTGTACGAGAGCC AGGCTGGGCAGGCCGTCCAGAGACACGAACACCATCACCACCACGAACATCACCACCATTACCACCACTT CTATCAGCCCTAGACCCCAGCAGGCTGCCACGGGAAGGACCCAGCCCACACCCTAAGGCATTATTATTCT ATTAATTATTGTTATTATGGCAATTATTGTTATTAATAATTATTGTTACTCCACTAATATTTAGCCAGCC TTCATGTAGAAGACACATGGAAACACAGAAGTAAACTTTTATTTATAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAA
Notes:	The probe template was PCR amplified from IMAGE:1429943 using vector (pT7T3D-PacI) specific primers. Forward Primer - name:RZPD M13 forward, sequence:GCTATTACGCCAGCTGGCGAAAGGGGGATGTG; Reverse Primer - name:RZPD M13 reverse, sequence:CCCCAGGCTTTACACTTTATGCTTCCGGCTCG. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:1429943 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:8203 same embryo
	EMAGE:8199 same embryo
	EMAGE:8202 same embryo
	EMAGE:8200 same embryo
	EurExpress:euxassay_005331 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source