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EMAGE:8393

Hpgds hematopoietic prostaglandin D synthase ( MGI:1859384)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:8393 EMAGE:8393 EMAGE:8393 EMAGE:8393 EMAGE:8393
"Pseudo-wholemount" of euxassay_009537. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_009537_01 euxassay_009537_02 euxassay_009537_03 euxassay_009537_04
EMAGE:8393 EMAGE:8393 EMAGE:8393 EMAGE:8393 EMAGE:8393
euxassay_009537_05 euxassay_009537_06 euxassay_009537_07 euxassay_009537_08 euxassay_009537_09
EMAGE:8393 EMAGE:8393 EMAGE:8393 EMAGE:8393 EMAGE:8393
euxassay_009537_10 euxassay_009537_11 euxassay_009537_12 euxassay_009537_13 euxassay_009537_14
EMAGE:8393 EMAGE:8393 EMAGE:8393 EMAGE:8393 EMAGE:8393
euxassay_009537_15 euxassay_009537_16 euxassay_009537_17 euxassay_009537_18 euxassay_009537_19
EMAGE:8393 EMAGE:8393 EMAGE:8393 EMAGE:8393
euxassay_009537_20 euxassay_009537_21 euxassay_009537_22 euxassay_009537_23

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:8393Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
8393_wholemount_strong.wlz
8393_wholemount_moderate.wlz
8393_wholemount_weak.wlz
8393_wholemount_possible.wlz
8393_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:8393_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T36915
Entity Detected:Hpgds, hematopoietic prostaglandin D synthase ( MGI:1859384)
Sequence:sense strand is shown

>T36915
AGCTGACTGGCCTAAAATCAAGCCAACTCTTCCATTTGGCAAAATCCCTGTTTTGGAGGTGGAAGGACTT
ACAATCCACCAGAGCCTCGCAATAGCAAGATATTTGACCAAAAACACAGATTTGGCTGGGAAGACAGCGT
TGGAGCAATGTCAAGCTGATGCAGTGGTGGACACGCTGGATGACTTCATGTCTCTCTTCCCATGGGCAGA
GAAAGGTCAAGATCTAAAAGAGCGGATGTTCAATGAATTGCTCACACATCAAGCACCTCGCCTTCTGAAA
GATTTGGACACATACTTAGGAGACAAAGAGTGGTTTATAGGCAATTATGTAACCTGGGCAGACTTCTACT
GGGATATCTGCAGCACCACACTTTTGGTTTTAAAGCCTGGCTTGTTGGATATCTACCCCAAACTGGTGTC
ATTACGGAACAAAGTCCAAGCTATCCCTGCCATTTCTGCCTGGATACTAAAGAGGCCACAGACAAAACTC
TAGATGAATCAGGACCCATCATCAGATGAGAACTCCATTAGCTGGCTAGAGGATCCACATACTTCTCACC
AATAGGACTGTAACTTTGTAGTACTCTGCTTGCTGTGTATAGCAACTCAAGGGGTGTTGCAGTTTTGTCT
TT
Notes:The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from wild type C57BL/6J mouse whole brain cDNA), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 95439. Forward Primer - name:095439_F_cDNA_Ptgds2, sequence:AGCTGACTGGCCTAAAATCAAG; Reverse Primer - name:095439_N_SP6_cDNA_Ptgds2, sequence:AAAGACAAAACTGCAACACCC. The reverse primer contains a 5' extension containing an Sp6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using Sp6 polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:8395 same embryo
 EMAGE:8398 same embryo
 EMAGE:8397 same embryo
 EMAGE:8394 same embryo
 EMAGE:8396 same embryo
 EurExpress:euxassay_009537 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS