EMAGE mouse gene expression spatial database

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EMAGE:18261

Zmat4 zinc finger, matrin type 4 ( MGI:2443497)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_012057. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_012057_01	euxassay_012057_02	euxassay_012057_03	euxassay_012057_04

euxassay_012057_05	euxassay_012057_06	euxassay_012057_07	euxassay_012057_08	euxassay_012057_09

euxassay_012057_10	euxassay_012057_11	euxassay_012057_12	euxassay_012057_13	euxassay_012057_14

euxassay_012057_15	euxassay_012057_16	euxassay_012057_17	euxassay_012057_18	euxassay_012057_19

euxassay_012057_20	euxassay_012057_21	euxassay_012057_22	euxassay_012057_23	euxassay_012057_24

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

18261_wholemount_strong.wlz

18261_wholemount_moderate.wlz

18261_wholemount_weak.wlz

18261_wholemount_possible.wlz

18261_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:18261_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

pituitary gland

strong

regional

strong expression: see section 10 11 12 13 14 15

diencephalon lateral wall mantle layer

moderate

regional

moderate expression: see section 07 08 09 10 11 12 13 14 15 16 17 18 19

telencephalon mantle layer

moderate

regional

moderate expression: see section 04 05 06 07 08 09 10 11 12 14 15 16 17 18 19 20 weak expression: see section 21 22 23

olfactory cortex marginal layer

moderate

regional

moderate expression: see section 10 11 12 14 15 16 17

medulla oblongata alar plate mantle layer

moderate

regional

moderate expression: see section 07 08 09 10 13 14 15 16 17 18

medulla oblongata basal plate mantle layer

moderate

regional

moderate expression: see section 07 08 09 10 11 12 13 14 15 16 17 18

rest of cerebellum mantle layer

moderate

regional

moderate expression: see section 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21

midbrain mantle layer

moderate

regional

moderate expression: see section 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20

facial vii ganglion

moderate

regional

moderate expression: see section 04 05 19 20 21

glossopharyngeal ix ganglion

moderate

regional

moderate expression: see section 07 18

trigeminal v ganglion

moderate

regional

moderate expression: see section 03 04 05 06 07 08 17 18 19 20 21 22 weak expression: see section 09

vagus x ganglion

moderate

regional

moderate expression: see section 08 17

vestibulocochlear viii ganglion

moderate

regional

moderate expression: see section 06 07 18

trigeminal v nerve

weak

regional

weak expression: see section 08 09

spinal cord mantle layer

moderate

homogeneous

moderate expression: see section 08 09 10 11 12 13 14 15 16 17

cervico-thoracic ganglion

moderate

regional

moderate expression: see section 09 10 16

cervical ganglion

moderate

regional

moderate expression: see section 08 16

thoracic ganglion

moderate

regional

moderate expression: see section 13 14 15

dorsal root ganglion

moderate

regional

moderate expression: see section 07 08 09 10 11 16 17 weak expression: see section 18

saccule

moderate

regional

moderate expression: see section 04 06 weak expression: see section 18

cochlea

moderate

regional

moderate expression: see section 02 03 04 06 weak expression: see section 07 09 16 18 19

utricle

moderate

regional

moderate expression: see section 05 06 weak expression: see section 20

neural retina

moderate

regional

moderate expression: see section 01 02 03 23 24

nasal cavity olfactory epithelium

moderate

regional

moderate expression: see section 10 12 14 weak expression: see section 08 09 11 15 16 17

vomeronasal organ

moderate

regional

moderate expression: see section 12 14 weak expression: see section 15

lower jaw incisor

moderate

regional

moderate expression: see section 07 08 13 19 20

lower jaw molar

moderate

regional

moderate expression: see section 19

palatal shelf

moderate

regional

moderate expression: see section 11 12 13 14

upper jaw incisor

moderate

regional

moderate expression: see section 07 08 13 18 19

upper jaw molar

moderate

regional

moderate expression: see section 07 19

urethra of male

weak

regional

weak expression: see section 11 12 13 14

Annotation Validation:

spatial mapping by EMAGE editor, text annotation by author

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T9516
Entity Detected:	Zmat4, zinc finger, matrin type 4 ( MGI:2443497)
Sequence:	sense strand is shown >T9516 AGCTGCTGAAAGGTCTGGTCGCAGAGACAGGAACGCAGCATCCTCAGCGTGCTCCATCCCGGCAGTGTCT TCCTGCGCTCCGCCGGGCGGCGAGCCTCCGGACGACAGCCCCTCTGCTTCTCGGAGAAGCCTGATGAAGT CCTCCGATATCGATCAGGATTTATTTACAGATAGCTACTGCAAGGTGTGCAGCGCACAGCTGATATCCGA GTCCCAGCGGGTGGCCCATTATGAGAGTCGAAAACATGCCAGCAAAGTCCGGCTGTATTACATGCTTCAC CCCAGGGATGGTGGGTGTCCTGCCAAGAGGCTCCGAGCAGAAAATGGAAGCGATGCTGACATGGTGGATA AGAATAAATGCTGTACACTCTGTAACATGTCCTTTACCTCAGCTGTGGTGGCCGACTCACATTACCAAGG CAAAATCCACGCCAAAAGGTTAAAACTGTTGCTAGGAGAGAAACCTCCACTGAAAACCACAGCCGCTCCG CTGAGCTCACTTAAGGCTCCTCGAGTGGATACGGCCCCCGTGGTCGCATCTCCCTATCAAAGAAGAGACT CAGACAGGTACTGCGGTCTCTGCGCAGCCTGGTTTAACAATCCTCTGATGGCCCAGCAGCATTACGAAGG CAAGAAACACAAAAAGAACGCAGCCCGCGTTGCCTTGCTAGAGCAGCTCGGAACATCTCTGGATCTGGGA GAACTGAGAGGTCTGAGACGTACTTACAGATGTACCACGTGCAGTGTGTCGCTCAACTCCATAGAACAGT ATCATGCACATCTGCAAGGATCAAAACATCAGACCAACCTGAAGAATAAGTAGTGACAGCATCTATCAAG AGCTAAGAAGAGACTCCCGCATTTCTCTGTGGTAGAGAACTGCTCACCAACCAAAGGAGGATCCTTTCTC AAGCAATGAACATTTCTTACAAGGATTCACAGATTAACACGTGACCAGTATTGATTTTTGAAAGTAAATA AGATTTCCTTTTCTTCTTCTCATTTAGTGGCAAATTATCCTTGGATTTAGAAGAATCCTTTTCTGATAAC ATTGTTTAGCACAAGTTCTAAACTGCAATCACACACACAGCAGCTAGTCAGAGCATTATTCAAACTTACA ATGAGTGGAAAATTTAATTTCCAATTCATTCTAGATTTCCGTAGAGTTACAATGATTCTGTGAGACCCTT CATGATTATCATGTAAGCCTCCTAGATCCATTAACAAATATACTTTTGTCATCATGGGGAACATAGTTGG TGACGCCAACCACAAGAACAGAGCAAATTGTGGTCTGTAGAAGTTATATAACAAATAGAATACCAGTCCT TCCTGCTTCACACCTATGAGCCAGCCTTGCCTCTAAATGCCAGGAGCGTGAAAGCAGGTGGGAACACAGA GGAAGGACCTTCACTCTGGATCACCTTGATGGAAAGCTTCACAAGACGAAGCCAAGTTCTCCTTGCAAGC TGCCAGATCATAGCTTAGGAAAAGAACTAGTTTTGATTGCATGATGATCCTATTAAGTAAAAATGTCTTC ACAGCGGTTGACCTTGATGGAGTGCTTTTGTAAAGGTATCCAAAGGAGAATTTTAAACCCCAGAGTGAGA TGGAAGTAATTCTTAGCAAGTTGGCCTGGATTGTGGGCTTTAATTTGGGGCAGTAATGATTTGGTGTGTG TCAAGGGAGGGAAGAGAATGATTAAATCCTGAAGAAGTTTCCTTCTTCTGTTTCTCTTCCAACTTGTTGC CGAGCTGGGGATTGAGTGACTTTGAACAGAACTCTTCTGGGAAGAGGATGGACCAGAGAACTGATGCTCT TTAAAGGGATCAAGTTTGAGTGCAACTGTGAAATTCCCTCTCCAGGGAATCACTGCTCTGCATTGTGTTG GGAAGTGGTGTCTTGCAGACACTGCAAGGTAGACACAGAACTTCCTTTCCTGGGCTCTCAGCTGGCTGGA GCAGCCCTTGACAACTTGTGACCACCAAGCTACCAAGTAACGTCAGACTTTTCCAGACATCAGCGCCTTC CACAGAGATCTGAGGTCGTGGACAGCCAGTGAGCAATAAACGAAACGACACGGAAACGCACAGTGTTGTT CTTAAGGTGCCTGTTTTGTTGTGTGAGGAGGTCACGGTCCTTAGGGACCAGACCCGTGGCTGCAAAGAGG AAGGTCACACACACCGTGTACAGTCATGCTGCAGGTGGGAAGCACGAGGGGTGTGGTGACAACAATTTTA TTTTGCTATTTTAGAAAGAAGCACACAACAGAGCTACAGCCCTCCCGTGATGGCTTTTCTTCGAATATGT GGAATAAAGCTTTATTTGTCAATTCTGCTGTAAAATAAGCATAGTCTGAGGTTTTGGTTTTTGTTTTTAA AATCTTTCTCTGTTTCTGTTTAGTGCCTGAGCTCTCTCCCTGAAGTGTTGTGTTTATTTTTGTTTTTAAT GGCCTAAGATAGAAAAGCCTATGAACATAGATCTCCTTTGCATTACAGTGACACTTTGCCAAGTCCTTTA TGGCTAAGCCTCCAGCTACAATAATCAGATTATTTCAGAGTGCCTCATCGAAATACCATTGCTCTTTGGC AAGCTGCCACAGACACCTACCAGACATTTTCTTGGTTTGATTGTTCTCAAGTATATTCATGCCCATGCAG ATAAGGGGAGTGTCATCCCAGCACGCTGTGAGGATCACTTGGCCAGACTACTATCTGCAAGAAGGCTCAA CATGCCACTGTGTTCTGGAGACTATCTAACAGACACACCTTTCCTCCAGAAACTGGGCTGTTCACTTTTG CTTTAGTGTGGCTGTATGTTCAATGAAGTCTTATGTTAGTTTCCAGTTTTATTATGACTGGACAGGAGTT GGGTGTAGGGCAAATGTTTTTCAGGGGCCCTTGATTCTGATGGGAAGAAAAGAGACAAACCTGTCTGTGT CTCTGTCTCCTGACCAGTCCATGTGGAGCAACCCTGAGAGAGAGAGAGCAATGTGATTACAATAAGAACT TGGGGTTAGTTCTATATCATTTGAGGAGAACATGGAGAAAACTCATCTATGAGAGAGGAGAGCTGTCCAT ACGACTGTGTCTAAATTAACGTGGATATTTCAGAGTTCAGAGTGATGTCAGCTAACCACATTAAGTTTTC TGGCCATAATGAGAAAAACTCAACACCTATCGGCCTCCTGTTAAATCGAGATATCTCTGTTTAATGGAAC AGTCACTAGCGGTTGACCTAGGTATCTCCCTGTTTCTCTCCCTTCTCCTATCATTCCAGGATATAGTCTC CAGGATGTAACATGCATTGCCCATGTGGTCTACCACTGAATGCCATGCTTAGGTGTGATTCCTCAGAACA CTAGATCACCCCTTAGTCCTGGCCATACCATTTGAATTTGCTTTACAAAATCTTCTTCCCGTTCAGTACG GATATGAGCTTGAGGCTAGCAACCTGTGTCAGTGGCCACAAATGCCATGATAGTAAGATCCAAATTAATG AGCTCTCCTTATAGACAGTCTCCATAGTCCAGGGAACTAATAAATACACTCATAAAGCAATCCGCTAAGC AGCAAGTGCTGTGGCCATTCCTTCTGCTGATAAAGTAGCCATAAAACTTTCATCTATTGCTGCTGGACTG AAAGACCAATGGGATCTGTTCTTTTTGGCCCTTTAGATGACAGAGATGCATAAATTGGAACTGCAAGGAT CTTTGCACTGTCTGTTGGAGTAAATTTAATTAGGCCAACTGTATCAAAAAGAAAAAAACAAAAACAAAAA ACAATGGGACCCACTTATAATGCTGTCATTCCTGCGGAACTCCCCATCTAGAGAGGCCACCTTCCTGTCA AAGCTGAGTGAGGCATTTTTGACAAGGCAGTGGGAATACAGGACATTAAACCCCAATAAGAGACCACGAG GTTGTAAAGACAGTCCCCACTAAATATCTGTCCTTCTCTTGAACAGCTTGTCCAGTGAATTATTTTTCTT TTGTAAGAATAAAACTAAGAAAAGTCTGTCTGTGCAACATATTATTGTAGGGATGGATTTTTCTCCCCTG CCCCCTTCTGGTTTTGAATTTGTTCATATTCAAGGCATGTTAAACTACCTCATAGGTTTGTTGTGTGGAT TAGCTGATTAATAAATAACAACTGATTAAAATACGAAAAAAAAAAAAAAAAAA
Notes:	The probe template was PCR amplified from IMAGE:30536600 using vector (pYX-Asc) specific primers. Forward Primer - name:RZPD T3, sequence:ATTAACCCTCACTAAAGGGA; Reverse Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:30536600 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:18262 same embryo
	EMAGE:18263 same embryo
	EMAGE:18258 same embryo
	EMAGE:18259 same embryo
	EMAGE:18260 same embryo
	EurExpress:euxassay_012057 same experiment
	MGI:4829358 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source