EMAGE mouse gene expression spatial database

Quicksearch Help

(Click the icon to keep this page displayed.)

EMAGE:19398

0610040J01Rik RIKEN cDNA 0610040J01 gene ( MGI:1923511)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_006073. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_006073_01	euxassay_006073_02	euxassay_006073_03	euxassay_006073_04

euxassay_006073_05	euxassay_006073_06	euxassay_006073_07	euxassay_006073_08	euxassay_006073_09

euxassay_006073_10	euxassay_006073_11	euxassay_006073_12	euxassay_006073_13	euxassay_006073_14

euxassay_006073_15	euxassay_006073_16	euxassay_006073_17	euxassay_006073_18	euxassay_006073_19

euxassay_006073_20	euxassay_006073_21

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

19398_wholemount_strong.wlz

19398_wholemount_moderate.wlz

19398_wholemount_weak.wlz

19398_wholemount_possible.wlz

19398_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:19398_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

submandibular gland primordium

strong

regional

strong expression: see section 05 06 13 14 15

pancreas

strong

regional

strong expression: see section 05 06 10 11

hypothalamus ventricular layer

strong

regional

strong expression: see section 08 weak expression: see section 09 10 11 12

cerebral cortex ventricular layer

moderate

regional

moderate expression: see section 15 16 weak expression: see section 03 04 05 06 07 08 17

olfactory cortex marginal layer

moderate

regional

moderate expression: see section 16 weak expression: see section 10 11 12 14 15 17

telencephalon ventricular layer

moderate

regional

moderate expression: see section 16 weak expression: see section 09 13 14 15

midbrain ventricular layer

weak

regional

weak expression: see section 07

stomach

moderate

regional

moderate expression: see section 04 05 06 weak expression: see section 01 02 03

hindgut

moderate

regional

moderate expression: see section 08 09 10 11 13

rectum

moderate

regional

moderate expression: see section 09 10

midgut

moderate

regional

moderate expression: see section 07 08 09 10 11 12 13 14 15 16 17

bladder

moderate

regional

moderate expression: see section 09 10

kidney calyx

strong

regional

strong expression: see section 03 04 05 06 11 12 13 14

urethra of male

moderate

regional

moderate expression: see section 09 10

left lung

moderate

regional

moderate expression: see section 01 02 03 04 05 06 07 08

right lung

moderate

regional

moderate expression: see section 09 10 11 12 13 14 15 16 17 18

trachea

moderate

regional

moderate expression: see section 07 08

Annotation Validation:

spatial mapping by EMAGE editor, text annotation by author

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T6493
Entity Detected:	0610040J01Rik, RIKEN cDNA 0610040J01 gene ( MGI:1923511)
Sequence:	sense strand is shown >T6493 GCCGCCGCCCCGCCGCAGGAAGAGTGGTTTAACACCCAGAGAAGCCTAATGGACAAGCGCCCCAGCAGAT GGTAACAAAAGATAATCCAGATGGGGTGCAGGTGTTGTAAGATGATACAAAGCTATCTCTTTGATCCAGT TCAAGTGCCCTCGCCTGGTTTTGTCAATGAAGTAAACAACTGCAAGTTGGAGGAAGATGACACTGTCAGA CTAAAAGGCACCCAGAACAGTGAGGTTGAGGTGCCCAGGAATGCCCTGCATGATGGGAGCCTGAGCAATT CAGAGAGCAGAGGCAGTACAACTGGTCTACCTCACCAAGGACCGCTCCCCCAGGAGGACTCAGAAGAGAG ACCCTGTGTGGAGAAGCAGGGTATTGTCAATGGCATCAGCCCCACTGCTACTCTGCAGTCGGTCAGGAGT TCCAGGCTCCACCAGGTTGACAATAGCTCCTGGGCCAGCAGCCCCTGGGTAGCCACCATAGACAGTGCTC ACCTGGCTCAACCCTTCCTTGAAGGAGAAGACTACAGGAAGCAAAGCTGCCTGCTGCCCACCTTGGAAGG GACCCAGATGATGGGACATGGAGACTGCAGAGCCCCTGCAGAGGCCTTGGCAGTGGCAGATCACATCCCA TACATACCAGCCCCAGATTATCCCCAGCTCTGGAGCCCCGCAGTAGACAACGCAGACCCTGAAGAAAAGG ATTGTCTTTTTGAAAACCACTCTGAGGTGGAGCCCCTTCCGGGAATTCAGCCCAGGGTGAGCCAGCAGGG TTTGAACGTGCCCTTCTCCCTGCAGAGAAGCTGGGACTCACTGAATGAGGCAGGGACCACAGAAGTTCTG AGTGACTACTTCAAAGAGGAGGGTCCCACTCACCCTACGCCAGCGGCTGATTCTGGAAATGAGCCGGAAG ACCCCCACACCTACAACGGGGACAGGGAGGGTGTTGTGGTAGATGAGGATGCTGAGGTGGCAGAAGCCCT CGCAGCATTAGAAGCTGCTACCGCAGGAGAAGATGCAGATGATGCCGATTAGTGGGAGGGGGGAGGCCAG GCGAGGGAGCTGCAGTCACAGGGAGCAGATAGAAGCATGTGCCCACTCTGCCAGCATGCCCCGGCAGCCT TGCCAGCTGGACCAGTTGTTTACATCTGTCATCTTCCCATTGCCAGTACCTGTGCCATGCTGCTTGCTGT ATAGGGCATCCCTCTACTCCGAATGCATTCAGAATGCTAGCATCAAAATAAGAGTGGGCCTTCATGTCCA TGACCACAACAAGTGCGGAAGTTAAGCAGCTTGCATGCTGTCCCTGAAAGTGCCCCCCCAGAACATCTGT CCAGATGTGCATGAGAATGCCCGGACATCCCCACTCTTGATCCCAGGGGCCATTCTGTTTGAATGTATTT CTTTACCTTGTTTTTGAGAGCCAAATACTTCACCCAACCTAGAAAAAGGTAACGATCCACTTAAAGTGCC TACTGTGTGCCAGAGCTTAACTTCAGGGACAGTCACCCAGGGAACTACTAACTAACCACTTGTTGAACAT CAAGTACCCTTCAGGGTAGAGCAGACTTGAACTGTGAACAAATGGTTAGTCCTCCACTGTGCTAGGAGAG CACCCTGACCTTAACTTTTTTTTACACTATTACTTTTTAATCTCCTTTGGGATACGGGAGGCTGGCCAAA ATACTTCTCAAAACTGTCGTCATGTTCTAGGTTCGAGTTCGTGAGTGTTTTGTAACAGCCTAGCCATTTA TGAAGGGCTCTGTGTCATTAAACGTCTGGTTCTCACTAAAAAAAAAAAAAAA
Notes:	The probe template was PCR amplified from IMAGE:3589105 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:3589105 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:19397 same embryo
	EMAGE:19400 same embryo
	EMAGE:19396 same embryo
	EMAGE:19399 same embryo
	EMAGE:19395 same embryo
	EurExpress:euxassay_006073 same experiment
	MGI:4822585 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source