EMAGE mouse gene expression spatial database

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EMAGE:7461

Cxcr7 chemokine (C-X-C motif) receptor 7 ( MGI:109562)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_005213. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_005213_01	euxassay_005213_02	euxassay_005213_03	euxassay_005213_04

euxassay_005213_05	euxassay_005213_06	euxassay_005213_07	euxassay_005213_08	euxassay_005213_09

euxassay_005213_10	euxassay_005213_11	euxassay_005213_12	euxassay_005213_13	euxassay_005213_14

euxassay_005213_15	euxassay_005213_16	euxassay_005213_17	euxassay_005213_18	euxassay_005213_19

euxassay_005213_20	euxassay_005213_21	euxassay_005213_22

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

7461_wholemount_strong.wlz

7461_wholemount_moderate.wlz

7461_wholemount_weak.wlz

7461_wholemount_possible.wlz

7461_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:7461_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

mesenchyme

moderate

regional

moderate expression: see section 01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22

adrenal cortex

moderate

regional

moderate expression: see section 08 09 10 16 17 18

adrenal medulla

moderate

regional

moderate expression: see section 09 10 16 17 18

diencephalon lateral wall ventricular layer

strong

regional

strong expression: see section 12 13 moderate expression: see section 14 15

diencephalon meninges

moderate

regional

moderate expression: see section 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20

telencephalon mantle layer

moderate

regional

moderate expression: see section 01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22

telencephalon meninges

moderate

regional

moderate expression: see section 01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22

telencephalon ventricular layer

moderate

regional

moderate expression: see section 03 04 05 06 07 08 09 10 12 13 14 15 16 17 18 19 20 21 22

hindbrain meninges

moderate

regional

moderate expression: see section 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20

rest of cerebellum marginal layer

strong

regional

strong expression: see section 20

pons ventricular layer

strong

regional

strong expression: see section 20

midbrain meninges

moderate

regional

moderate expression: see section 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20

midbrain ventricular layer

strong

regional

strong expression: see section 12 13 moderate expression: see section 09 10 11 14 15 16

spinal cord meninges

moderate

regional

moderate expression: see section 08 09 10 11 12 13 14 15

heart atrium

moderate

spotted

moderate expression: see section 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20

heart ventricle

moderate

spotted

moderate expression: see section 06 07 08 09 10 11 12 13 14 15

esophagus

moderate

regional

moderate expression: see section 11 12

stomach

moderate

regional

moderate expression: see section 03 04 05 06 07 08

kidney calyx

moderate

regional

moderate expression: see section 07 08 09 10 16 17 18

renal capsule

moderate

regional

moderate expression: see section 07 08 09 10 16 17 18

Annotation Validation:

spatial mapping by EMAGE editor, text annotation by author

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T7584
Entity Detected:	Cxcr7, chemokine (C-X-C motif) receptor 7 ( MGI:109562)
Sequence:	sense strand is shown >T7584 ACCACAGCCCAGGAAGCCCTGAGGTCACTTGGTCGCTCTCCTCAAGACCATGGATGTGCACTTGTTTGAC TATGCAGAGCCTGGCAACTACTCTGACATCAACTGGCCATGTAACAGCAGCGACTGCATTGTGGTGGACA CTGTGCAGTGTCCCACCATGCCTAACAAGAACGTGCTTCTGTATACCCTCTCCTTCATCTACATTTTCAT CTTCGTGATCGGCATGATTGCCAACTCTGTGGTGGTCTGGGTGAATATCCAGGCTAAGACCACAGGCTAC GACACGCACTGCTACATCTTGAACCTGGCCATTGCAGACCTGTGGGTCGTCATCACCATCCCCGTCTGGG TGGTCAGTCTCGTGCAGCATAACCAGTGGCCCATGGGGGAGCTCACATGCAAGATCACACACCTCATTTT CTCCATCAACCTCTTTGGGAGCATCTTCTTCCTCGCCTGCATGAGCGTGGACCGCTATCTCTCCATCACC TACTTCACCGGCACCTCCAGCTATAAGAAGAAGATGGTACGCCGTGTTGTATGCATCTTGGTGTGGCTGC TGGCCTTCTTTGTGTCCCTGCCTGATACCTACTACCTGAAGACGGTCACATCTGCTTCCAACAATGAGAC CTACTGCAGGTCCTTCTACCCCGAGCACAGCATCAAGGAGTGGCTGATCGGCATGGAGCTGGTCTCTGTC ATCTTGGGCTTTGCTGTCCCCTTCACTATCATTGCGATCTTCTACTTCCTGCTCGCTAGAGCCATGTCAG CATCAGGCGACCAGGAGAAGCACAGTAGCCGGAAGATCATCTTCTCCTACGTGGTGGTCTTCCTGGTATG TTGGCTGCCGTACCATTTTGTGGTTCTGCTGGACATCTTCTCCATCTTACACTACATCCCGTTTACCTGT CAGCTGGAGAATGTGCTCTTTACAGCGTTGCATGTCACCCAGTGCCTGTCCTTGGTGCACTGCTGTGTCA ACCCCGTGCTCTATAGCTTCATCAACCGCAACTACAGGTACGAGCTGATGAAGGCCTTCATCTTCAAGTA CTCGGCCAAAACAGGTCTCACCAAGCTCATTGATGCCTCCAGAGTGTCAGAGACAGAGTACTCTGCCCTG GAACAGAACACCAAGTGATCCATCATTCTGCAGAGGTCGGGGGGACACGTGCATGTTGCAAATGGGGCGG CTGGGTCCTGTGGTTTCTTCAAGAAAGCAATGTAGCTTTGGGTCTGGTTGCTTGAGTGGTATGAAGAGGA GAAGGCATGTGACCATGCTTCCTGTCTCTCATTCTCCAGCCAAGATGGCTGCCGCCTGGATGCCCATCCT GACAGCTGGCAGCTGGCAGCAGGCAGGGCTGTGCTGTGCTGTGCTGTGCTGCGCTGTGCTGTGCTGTGCA GCCAGAGCTGCGTATCAAAGCCAGCACCAGGACAGGATCTTATGGACATGTGTACAGTAGAATCTTCTGT GTTTCTTCAAGTTTTTACTTGGTGACTTTTTGTATTTAAGTTTTAAGACTTTATTTTCTCACTATGGATG TACCTTATAAATGTATTTGAAAGCTAAATATATTTTAAATATTGTATGGGAGGTGTAAGGCTGTTGTATT CAGACCATGTAGGCCTCAGATTAGCTGGACTTGAGTTTTGACTAAGGATGACATTAATTGTTAGCTGATT TGAAATTATATATATAAATATAAAAATATATATAAATTTATGCCAGTCTCGGCTGAAAGGTTTTATTTAC AATAGTTTTATATCTGTGCAATGTTTAATGCTGGCACAGCATATGAAACAACAACTGCCCAGCAATGCAG TTTGTTACATGAACCATATTGTAGAGTTACACTTCGGGCTGCAAACCCGTGAACAAGGGAAACAGAGCGT TCTGTTGATTTGTAAGTTATTTTTTTAATAAAGATTTTGTTTCCTAAAAAAAAAAAAAAAAAAAAAAAAA
Notes:	The probe template was PCR amplified from IMAGE:4242244 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:4242244 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:7464 same embryo
	EMAGE:7463 same embryo
	EMAGE:7462 same embryo
	EMAGE:7460 same embryo
	EurExpress:euxassay_005213 same experiment
	MGI:4824137 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source