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EMAGE:7578

Olfr536 olfactory receptor 536 ( MGI:3030370)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:7578
euxassay_004652_01

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:7578Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
7578_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:7578_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Text Annotation:
StructureLevelPatternNotes
nasal cavity olfactory epithelium
strong strong
single cellstrong expression: see section 01
Annotation Validation: spatial mapping by EMAGE editor, text annotation by author
Detection Reagent
Type:in situ hybridisation probe
Identifier:T7707
Entity Detected:Olfr536, olfactory receptor 536 ( MGI:3030370)
Sequence:sense strand is shown

>T7707
CTCAGGACCAAGGCATCCCTGAAGCCCAAATGGTGTGATTTCCACATACTTTGCTGAACACCCAGCCACA
TGCCTATGAGCGTACAGGCTGTCTAGACAGCACAGACAGCAAGTTGCTCTTGACCCCCTGCAAGGCCACT
GTGGGCAACTATTAGAGAACAGGTTCCTCATTACACAGAGTTGATGGTTTCCTGAAATTTAAAAGGCTTT
TTTGAGCAATTCCTGTCCTGAGACTAGAGGTGCTTCCCATGGCTCCAGTGAACCAGTCAGCTATAACCAT
GTTCATCCTGCAAAACTTCGTTGATGACCCCTGGATCCAGGATGTTCTCTTCTGCCTCCTCTTTGCCTTG
TTTATGGCAGCCATAGCTGGCAATGGCCTGATCATCGCCACCATTCACAGCAGTCCCAACCTCCACACTC
CCATGTACTTCTTCCTAGTCAACCTTGCCCTGATGGATATGATCTGCACTGTGACTGTCTTGCCCAAAGT
CCTGCAGAGCCTGGTGGCAGAGAACAGCATATCTTATGGAGGATGCCTCATACAGATGTTTGTCTTCTCC
TGGGTCCTGGGCTCTGAGCTTCTGCTTTTCTCTGCCATGGCCTATGACCGCTACCTTGCAATCTGTCGGC
CACTGCACTATGGTACCCTCATGAGTGGCAGGGTCTGTGTGGCCCTTGCAACCTTTGTGTGGTTCATTGG
AGCTCTCAATTCCTTGGTGCTCACTTGTCTGGTGTTGCCACTGTCTTTCTGTGGTTCCAATCTCATTGCA
CACTTCTTCTGTGAGATCCCTTCTGTATTGATACTGTCCTGCAGTCCCACCTTTATCAACAATGTCATGA
CTGTCATTGCAGACATGTTCCTGACAGGCCTGAACTTCCTGTTGACTATGACATCCTATGTCTTCATCAT
TTCCAGCATCCTGCGCATCCGCTCAGCTGAGGGCAAGAAGCGTGCCTTCTCCACCTGCTCTGCCCACCTG
GTTGTGGTCACCCTTTATTACTCTACTGCTCTATATACTTATGTCCGACCAGCCCTAGGAACTGCTGGGC
TCCTGGACAAGGTCATTGCTATTCCGTACACAACTGTGACCCCATCTCTGAACCCCCTTATCTATACTCT
GAGAAACAAGGAATTCAAAACATCCTTTAAAAAACTTTTATTTCCCCGTTGATGACTTTGAGCTTGGAGA
AGAGCTGGCAAGGAGCTCAAGGGATCACTGAAACCTTCCTTTCTGTAACATCTGACTCCGGAGGGCACAG
GCTAAGTTATAGCCTGGGACAGCTGTCCAAAGTCTGTATACAGAAAATCATGCTGTCTACAAGATGTTTT
AGTAAGCTTTAGCCATTTCTACTTCATACATAGATGTGTGTGCTTATAAGTTCAATGCTCTTAAATGTTA
AGATGCTTCTATGACTGAACCAAATGTAGTTAAATATTGAGTATAGTCCTTTTAATGACCTATTTAAAAT
TCCCTGATCCTCTGTGTCACTGGCTGCAAGTGAATGCTTATAGAGATAAAGAAACATGACTCCCTCTGCT
CCCACCCCCGCCATACACACATCTGCTCTGAGCATTTGCTGGCCTGATTTGGCTGTTTTCATCTTTCTTA
TTCTTATCTCACAGTTTACACTGGTGCTTGGATCATTTAATAGTTGAAGGAAGGAAACTAATAAACAAAC
TGAGTTAGGGCTGGGTATGGGGGCCTAGGATCTCTATGGAAATGTCTCTGATCTCAAGACACAGATTGGA
GTTAGACACTGGCATGGTGGCTTCTTCTCAGATCTGATGCCATTGCAAAGATTTGCTAAGTCATAACTAA
TTTGTACTTCAGCATTTCTCCTGCTGTGTGAGTTTTGTGTGACATGACCATTCTTCACGGGTTATTATTA
TTCAACACTGCATGTTGTCTGTAATGTTCACCTGATACGAGCTCTGTTTCACTGCAAAAGGAGCTCAGAA
ATAGAGTTTTTCAGATGGGTTCATGTTGATGTGAGCATTTTGAGCATTAAACCCATTGTGGTGTTTGCCT
ATATGTGGTAGAGAGTCATGCAACTAATGCAGAAGAAATGGCAACAAACACAAAACAACAACAATAACAA
CAACATACATACATACATACATGCATACATACATACATACATGATTAAGAGATGAGGTAAACAGGATGGG
GGAAAATAACAGGAAAAACAAGACTGGGTCAATGAACCATGGCTGTGATGATTAATATATTCAGTTATTT
TGACTAGACTAACCTCTAAAAATATTGATGAGAGGCCCTCTATGAGTATCTGTAAATGTTTTCTGAAGAG
GATCCACTGAGCAGCTGTAACCCATCTCCAGTGTGGTTAGCACCATGACATGCACTGTGGACAGGCAAGA
ATGGGACCAGGTGGAAGGAGAAACTAGCTTAACTTCCTCCATTCTCTGTCTGCTCAATGACTGCAGAGTC
AAGGCAAAAATAAGGAAAGAAAATAAAGACTTCCTGGGAATCAATGAAAATGAATCCACAATATACCCAA
ATTAGGGAACACAACGAAAGCAATGCTAAGAGGAGCATACATAGCACTACATAGGTAAATAAAGTTGGAG
AGATCGCCTACTAGCAAATTAAGAAAAGAACTGAAACTCCAGAATACTGCAGGACTAGGTGTCTCCTTTC
CCTCTGAGGCCAGACAAGGCAGCCTAGTTAGAGGAACAGTATTCAAAGGCAGGTAACAGACTTACGGATG
GCCCTTGCTCCAGTTGTTGGCACACCCCCGAATGGAGACTGAACTGCACATATGTTACATGTGTGTGTGG
CGGGGAGGTAGGAGATAGCCCATGTATGCTTTTTGGCTGGTGGTTCAATCTCTGGGAGTCACCAAGGGTC
CAGGCCAGTTGACTCTGTTGATCTTCCTATGGGGTTCCTATCCTATCTGGGTCCCTCAATCTTTCTCCCT
ATTCTTCCACAAGACTCCTGGAGCTCTGTCTAATGTTTGGCTATGGGTCCCTGCATCTCTTTCTGTGAGC
TGCTGGCAGTAGCCTCCTAGAGGACAGTTATACTGAGATCTTGTCTGCAAGCATAACAGAGTATCATTAG
TAGTGTCAGGAATTGGTTCTTGCCCGTGGGATGGCTTTCAAGTTGGGCCTGTCATTAGTTGGCCATTCCC
TCAGTCCCTGCTCCATCTTTAACCCTGCACTTCTTGTAGGCAGGAGAAATTTTGGGTCAAAGATTTTATG
GGGTTGAAGTCATTATCCCTCCACTGGGGGTTCTGCCTGGCTACAGGATGTGGCAATTTCAGGTTGCATA
TCCCCACTGCTAGGAGTCTTAGCTAGAGTCACTCCCATAGACTCCTGGGAATCTTGCCCATCCCAGGTCT
CTGGCATGTCCTAGAGATGCCCCCCATCCCTGCCAGCTGCAGATTCCCATTCACTCTCCTGGCCTTCTCT
CCTAGTCTTTCCCCACACCTGATTCTGATTCCCTTTTCCCCATTCCCATGCCACCCAGTTCCCTCTCTTC
ATCTGTGTCCAATGACTATTTTATTCCCCTTCTGAATGAGATTTAAGCATCCTTGCTTGGATCAATCTTT
TTATTTAGCTTGTTTAGGTCTGTGGATTTTAGTGTGTGTATCCTATACTTAATGACTAATAACCACTTAT
AAATGAGTATGTACCATGCATGTCCTTTAATGTCTGGGTTACCTCACTCGGGATGATATTTTCTAATTTC
ATCCATTTACCTGCAATTGTTTTTAATAGCTGAGTGGTATTCCATTGTATAAATGAACCACATTTTCTGT
ATCCATTCTTTGGTTGAGGGGCACCTAAGTTGTTCTGTTTCTGGCTATTATGAATAAAGCTGCTATGAAT
ATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:6307473 using vector (pCMV-SPORT6.1) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:6307473 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:7574 same embryo
 EMAGE:7573 same embryo
 EMAGE:7575 same embryo
 EMAGE:7576 same embryo
 EMAGE:7577 same embryo
 EMAGE:7572 same embryo
 EurExpress:euxassay_004652 same experiment
 MGI:4826920 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS