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EMAGE:10764

D230037D09Rik RIKEN cDNA D230037D09 gene ( MGI:2443862)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:10764 EMAGE:10764 EMAGE:10764 EMAGE:10764 EMAGE:10764
"Pseudo-wholemount" of euxassay_003131. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_003131_01 euxassay_003131_02 euxassay_003131_03 euxassay_003131_04
EMAGE:10764 EMAGE:10764 EMAGE:10764 EMAGE:10764 EMAGE:10764
euxassay_003131_05 euxassay_003131_06 euxassay_003131_07 euxassay_003131_08 euxassay_003131_09
EMAGE:10764 EMAGE:10764 EMAGE:10764 EMAGE:10764 EMAGE:10764
euxassay_003131_10 euxassay_003131_11 euxassay_003131_12 euxassay_003131_13 euxassay_003131_14
EMAGE:10764 EMAGE:10764 EMAGE:10764 EMAGE:10764 EMAGE:10764
euxassay_003131_15 euxassay_003131_16 euxassay_003131_17 euxassay_003131_18 euxassay_003131_19
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euxassay_003131_20 euxassay_003131_21 euxassay_003131_22

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:10764Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
10764_wholemount_strong.wlz
10764_wholemount_moderate.wlz
10764_wholemount_weak.wlz
10764_wholemount_possible.wlz
10764_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:10764_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T5410
Entity Detected:D230037D09Rik, RIKEN cDNA D230037D09 gene ( MGI:2443862)
Sequence:sense strand is shown

>T5410
TGAGACCCGGGGCTGCTCGGCTTGGCTGTCAGGCTGGCCCGGCGTCCGGCCGGGAGCCGAGCTCGGGCCT
CTGCAGGCCAAGCCTGGCGCCACTGCCCAGCTCAGCTCGGCGGCGGGTGCAGTGGGGGGCGGGCCCGGCA
TCTCCAGGTGGTTCCCCCCGCCTGGGGCTCCGGAGGGCGACGGGGCCCGCCGCCGCCGCGTGACCAGCCG
TAGTCACGCTGAGCTTAATCACTACTAGCTCGTGCTCCCGCCGCCGCGCTCACCTTCTTCAGCTGCGCGA
CCCAGAGGGTTTCTCTTAAGGTGGCTTGTTCTGAAATGCCAAAGGCACCTGACTGTTCAGAACTGAGTGA
CTCTTGCTCGCTTGCAGGGGGAACAGGAAGATTTTCGGGACCACTGCACAGAGCATGGAGAATGATGAAC
TTCCGTCAGCGGATGGGATGGATTGGAGTGGGACTGTATTTGCTAGCAAGTGCAGCAGCGTTTTATTATG
TTTTTGAAATCAATGAGACTTACAACAGGTTGGCTTTGGAACACATTCTGCAGCACCCTGAGGAGCCTCG
GGAAGGAACCACATGGACACACTCCTTGAAAGCTCGGTTACTTTCCCTGCCCTTTTGGTTGTGGACAATT
ATTTTCTTGATTCCGTACTTACAGATGTTTTTGTTCCTTTATTCTTGTACGAGAGCGGATCCCAAAACAG
TGGGCTACTGTATTATCCCCATATGCTTGGCAGTTATCTGCAATCGTCATCAGGCATTTGTCAAGGCTTC
TAATCAGATCAGCAGACTACAACTGATTGACACATAACACCCATCACCGGTTTCCCTTATTGTAAGACTG
CCAGCACTGTATAGTGGCTGACCACAAGACTGCAGTTTCTTCACAGGTCTCAGGAAGTTGTGGTGGAACG
AGACTTAAAAAGTGACAAGAGGACTGACTACTTTATCTGAATAATGACTTTTTAGGTAAAGCCTGAAATA
TAGTACTACACAATCATGTTGATGACTTCAGAGTTTGGAAGTAAAATAGTGGCTTGTAACCTGCAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:5366962 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:5366962 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:10762 same embryo
 EMAGE:10763 same embryo
 EMAGE:10761 same embryo
 EurExpress:euxassay_003131 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS