EMAGE mouse gene expression spatial database

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EMAGE:10797

Zfp536 zinc finger protein 536 ( MGI:1926102)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_003232. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_003232_01	euxassay_003232_02	euxassay_003232_03	euxassay_003232_04

euxassay_003232_05	euxassay_003232_06	euxassay_003232_07	euxassay_003232_08	euxassay_003232_09

euxassay_003232_10	euxassay_003232_11	euxassay_003232_12	euxassay_003232_13	euxassay_003232_14

euxassay_003232_15	euxassay_003232_16	euxassay_003232_17	euxassay_003232_18	euxassay_003232_19

euxassay_003232_20	euxassay_003232_21	euxassay_003232_22	euxassay_003232_23	euxassay_003232_24

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

10797_wholemount_strong.wlz

10797_wholemount_moderate.wlz

10797_wholemount_weak.wlz

10797_wholemount_possible.wlz

10797_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:10797_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

limb

moderate

regional

moderate expression: see section 01

forelimb

moderate

regional

moderate expression: see section 01 02 03

hindlimb

strong

regional

strong expression: see section 05 06 moderate expression: see section 02 03 04 24 weak expression: see section 23

adrenal gland

weak

regional

weak expression: see section 11 12 13 19 20 21

brain

moderate

regional

moderate expression: see section 01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24

pituitary gland

moderate

regional

moderate expression: see section 11 12 14 15 16

vibrissa

strong

regional

strong expression: see section 09 10 moderate expression: see section 21 22 weak expression: see section 07 08 11 12 13 14 15 16 17 18 20 23

glossopharyngeal ix ganglion

strong

regional

strong expression: see section 20 moderate expression: see section 08

trigeminal v ganglion

strong

regional

strong expression: see section 04 05 09 20 21 moderate expression: see section 03 06 07 08 18 19 22 23

vagus x ganglion

moderate

regional

moderate expression: see section 09 19

vestibulocochlear viii ganglion

strong

regional

strong expression: see section 20 21 moderate expression: see section 07 08 09 10 18 19

trigeminal v nerve

moderate

regional

moderate expression: see section 07 08 18 19 20

spinal cord

moderate

regional

moderate expression: see section 11 12 13 14 15 16 17 18 19 20

cochlea

strong

regional

strong expression: see section 24 moderate expression: see section 02 03 04 weak expression: see section 23

retina

moderate

regional

moderate expression: see section 01 02 03 21 22 23 24 weak expression: see section 04 05 06 07

nasal cavity olfactory epithelium

strong

regional

strong expression: see section 18

viscerocranium

strong

regional

Expression in the turbinate bone.

esophagus

weak

regional

weak expression: see section 13 14 15

stomach

moderate

regional

moderate expression: see section 04 05 06 07 08 09 10 weak expression: see section 03

hindgut

moderate

regional

moderate expression: see section 14 15 16 17 18

rectum

moderate

regional

moderate expression: see section 14 15 16

midgut

moderate

regional

moderate expression: see section 12 13 14 15 16 17 18 19 20 21 22

midgut loop

moderate

regional

moderate expression: see section 06 07 08 09 10 11 12 13 14 15 16 17 18 19

mandible

strong

regional

strong expression: see section 12 13 14 15 16 17 moderate expression: see section 09 10 11 18 21

lower jaw molar

strong

regional

strong expression: see section 20 moderate expression: see section 05 06 07 21 22

upper jaw molar

strong

regional

strong expression: see section 20 moderate expression: see section 06 21

bladder

strong

regional

strong expression: see section 14 15 16 17

renal medullary interstitium

strong

regional

strong expression: see section 11 12 13 20 21 22 moderate expression: see section 19 weak expression: see section 10 23

genital tubercle of male

strong

regional

strong expression: see section 11 12 13 14 15 16 17 18 moderate expression: see section 19

thyroid cartilage

moderate

regional

moderate expression: see section 14 15 16

lung

moderate

regional

moderate expression: see section 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24

tail dorsal root ganglion

strong

regional

strong expression: see section 12 13 14 18 19 20 21 moderate expression: see section 10 11 15

Annotation Validation:

spatial mapping by EMAGE editor, text annotation by author

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T5421
Entity Detected:	Zfp536, zinc finger protein 536 ( MGI:1926102)
Sequence:	sense strand is shown >T5421 CCACGCGTCCGACAATCTTTTACAACGCTCGGTTTACGTGCCCGAGTTTGCTCCCGACGCCCGCGTTTAA TGTTTTAAGTTCCTGAATGCCACGGCTTTAAGAACATCCTACACCCAAGACGGAACTCTGTGGCTTTAAG ACTTGCCTGGGAGCTGGGGCCCACCCCTCTGGCCATCTTTCAGCAACCAGAGCATCTTTTCCGAGGAACA TTCTTACTAGACTGACAGTCCTTAAGTCAAGCATGCAGTGAGGGTGTTAAGGGATGGAAGAAGCGAGTCT GTGCCTTGGAGTGTCCTCGACGGCACCGGAAGCTGAGCCTCATCTGAGCGGCCCAGTCCTCAATGGCCAG TATGCCATGAGCCAGAAGTTGCACCAGATCACTTCCCAGCTCAGCCATGCCTTTCCTGAGTTGCACCCGC GGCCCAACCCAGAGGAGAAGACACCTGCGGCCCTTGAGGAGAAGGCCCACGTGCCCATGAGCGGACAGTC CATGGGCAGCCAAATGGCACTGCTGGCCAACCAGCTGGGCCGTGATGTAGACAACAGCCTCAATGGGCGT GTGGATCTGCAGCAGTTCCTCAATGGGCAGAACCTAGGAATCATGTCTCAGATGAGTGACATTGAGGATG ATGCCCGAAAGAACCGGAAGTATCCGTGTCCCCTGTGTGGCAAGCGTTTCCGGTTCAATAGCATCCTCTC CCTGCACATGCGCACTCACACCGGTGAGAAGCCATTCAAGTGCCCCTACTGCGACCACCGCGCGGCCCAA AAAGGAAACCTCAAGATCCACCTGCGGACCCACAAGCTGGGCAACTTGGGGAAGGGGCGCGGGCGGGTAC GTGAGGAGAACCGTCTGCTGCACGAGCTGGAGGAGAGGGCCATCCTGCGGGACAAGCAAATGAAGGGCAG CCTGCTGCAGCCAAGGTCTGATCTCAAGCCCTTGGCACATGCCCAGCAGGCCCCGTTGGCCACCTGCAAC TTGGCCTTGCCTCCCAACCATAGCGTGCCCGATGTAGCCCACCCGGCACCTTCCCCCAAGCCGGCCAATT TGCAGGAGGATTCGGTGACCCCGGCTGCGGGCTTCCGATGCACCTTTTGCAAAGGCAAATTCAAGAAGCG AGAAGAGCTGGATCGCCACATCCGCATTTTGCATAAGCCCTACAAGTGCACACTGTGTGACTTTGCCGCC TCCCAGGAGGAGGAGCTCATCAGTCACGTGGAGAAGGCCCATATCACTGCGGAGTCTGCCCAGGGCCAGG GCCCCAATGGTGGGGGAGAGCAGTCAGCAAACGAGTTCCGCTGTGAGGTATGTGGCCAGGTGTTCAGCCA GGCCTGGTTCCTGAAGGGCCACATGCGCAAGCACAAAGACTCTTTTGAGCACTGCTGCCAGATATGTGGG CGGCGCTTCAAAGAGCCTTGGTTCCTGAAGAATCACATGAAGGTCCACCTCAACAAGCTATCGGTGAAGA ACAAATCCCCCACTGAGCCTGAGGTGGCGGTGCCCATGGGTGGCCTGTCCCAGGAGGCCCATGCCAACCT ATACTCTAGGTACCTCTCCTGCCTGCAGAGTGGCTTTATGGCCCCAGACAAAGCCAGTCTGAATGAGCCC TCTCAGCTCTATGGCAAGGGGGAGCTCCCGGCCAAGGAGAAGGAGGTTCTGGGAAAGCTACTGTCTCCCA TTTCCAGTATGGCTCACAGTGTCCCCGAGGGGGACAAGCACTCCCTCCTGGGCTGCCTCAACCTCGTGCC ACCACTGAAATCCAGCTGCATCGAGCGGTTGCAGGCAGCTGCCAAAGCTGCAGAAATGGACCCTGTGAAT AGCTATCAGGCCTGGCAGCTCATGGCCAGGGGCATGGCCATGGAACACGGCTTCTTATCTAAAGAGCATC AGCTCTCGCGCAACCACGAAGACCCTTTGGCAAACACCGGAGTTCTGTTTGATAAGGAGAAGCGGGAGTA CGTGTTAGTGGGAGCAGATGGCTCCAAGCAGAAAATGCCTGCTGATTTGGTTCACAGCACTAAAGTGGGC AATCAGAGAGACCTGCCAAATAAGCTCGACCCTCTAGAAGGCAGTCGGGAATTTTTGTCACATGGGCTCA ACCAGACGCTAGACTACAACCTGCAGGGTCCTGGGAACATGAAAGAGAAACCCACTGAGTGCCCGGATTG TGGACGGGTTTTCCGAACCTACCACCAGGTGGTCGTGCATTCTCGAGTCCACAAGCGGGACCGCAAGAGC GATGAGGACGCTCTGCACGTGGGTGTGGGCCTGGAGGAGAGGCGAGGCTCAGGCAGCGACCAGGAGTCCC AGTCAGTGAGCCGCTCCACCACACCTGGCTCCTCTAACGTGACTGAGGAGAGTGGGGCCGGAGGTGGCCT GTCGCAGACCGGAAGCGCCCAAGAGGATAGTCCACACCCCTCTTCACCATCTTCCTCAGACATCGGCGAG GAGGCCGGGAGAGCCGGTGGCGTCCAGCAGCAGGCGCTGCTTCGAGACAGGAACCTGGGCTCGGCCATGA AGGACTGCCCGTACTGTGGGAAGACTTTCCGGACTTCCCATCACCTTAAGGTCCACCTGAGGATACACAC AGGTGAGAAGCCCTATAAGTGTCCTCACTGTGACTATGCTGGCACCCAGTCAGCGTCCCTGAAGTATCAC CTGGAGAGACACCATCGGGAGCGGCAGAATGGAGCCGGGCCCCTGTCAGGACAGCCCCCGAACCAGGAGC ACAAGGATGAGACCTCTAGCAAAGCGCCTATGTTCATCAGGCCGGACATCCTTCGAGGGGCTTTTAAGGG TCTCCCCGGAATCGACTTCCGAGGTGGTCCCGCCTCTCAGCAGTGGACAGCCGGCATGCTCTCCTCCGGA GATCATTCAGGGCAGGCCACTGGCATGCCCTCAGAGCTGTCTTCAGATGCCCTAAAAGGCTCCGACCTTC CTTCCAAAAGCTCCCACTACTCGGAGATCGGAAGAGCTTATCAAAACATCGTGAGCAACGGTGTGAATTT CCAAGGGTCCCTGCAGGCCTTCATGGACAGCTTTGTCCTCAGCTCTTTGAAGAAAAAGGACACAAAGGAC AAGGTCCCGTCTGATGCCCATCCCATGAAAGCCCATACTGCAGAGGGTGGAGAGGAGAAAGCAAGCATGA AGCCCTCCCAGCGAAAGTCTGAGAAGTCTCAGTACGAACCTCTGGACTTGTCCGTGCGGCCAGACGCCCC CACTCTCCCTGGCTCCTCCGTGACCGTGCAAGACAGCATCGCGTGGCACGGCTGCTTGTTCTGCGCTTTC ACCACCTCGTCCATGGAGCTGATGGCCCTTCACCTCCAGGCCAACCACCTAGGCAGAGCAAAACGCAAAG ATCACCCCACAGGGGTGACAGTCAACTGCAAAGAGCAGGGGCGGGAGGCCAGCAAGGTCTCTGTACTGCC TTCCCTACAGTCAAACAAAGAGATGGCCCTTCCTAGCGCTGTTGGTGTGCTCGACTCTGCTCCTGAGAAG TTGGCCCAAGGGCCAGCCAAAGAGACTCTAGGGGACCCGAAGAGTGGTCAGTGGCCCAACCACATGGACC CTGCCTTTTGTACCTTTCCATCTGACTTCTACAAACAGTTTGGCGTTTACCCCGCTATGGTTGGCTCAGG GGCCCCGGGCTCCTGCCTCAACAAGAACACCGAGGGGAAAACCCACCCAGATGACGACGCCCCTATCCTG ATCCCGGAAACCACGAACAAAAACACTACTGATGACCTCTCAGATATTGCCTCCTCCGAGGACATGGACT CCTCCAAGGGAGAAAACAATGAGGACGAGGAGCTAGACACCGAACCAGAAATGACGAGCAAGCCTCTGTC TGCTCTCAGCAAGGATGGCAGCAGTGAGGGCGGCGACAGCCTGCTGTCCCCAGGCGCCCCGCAGCCCATC CAGGGACTGGTCTCACCTTTAGCCCAAGCAGCCGAGGAACAGTGGCACAGCCCAGGCCTCCTTCCTGCCC AGGACCCCTCGGCGGGGCTGCCCAAACCAGAGCGGGGTCCCCCGGGCTTGGAGAAACCTATGAGCATGCT GTCGGTCCTCAGGGCCTACAGCGCCGATGGCTTAGCAGCCTTTAACGGGCTTGCTAGCAGCACAGCAAAT TCTGGATGTATCAAGAGGCCAGACTTGTGTGGTAAGTTTTAGAATCCTCTTCCTTCAGTTCATTTCCCAC AAAAACGTCACTGCTAAATTGTGCATCCAAAAAAACAAAAAACAAAAACAAAAAAAAAAAAAAAA
Notes:	The probe template was PCR amplified from IMAGE:5367892 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:5367892 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:10798 same embryo
	EMAGE:10795 same embryo
	EMAGE:10796 same embryo
	EMAGE:10799 same embryo
	EurExpress:euxassay_003232 same experiment
	MGI:4829317 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source