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EMAGE:11331

Snapc2 small nuclear RNA activating complex, polypeptide 2 ( MGI:1914861)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:11331 EMAGE:11331 EMAGE:11331 EMAGE:11331 EMAGE:11331
"Pseudo-wholemount" of euxassay_003551. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_003551_01 euxassay_003551_02 euxassay_003551_03 euxassay_003551_04
EMAGE:11331 EMAGE:11331 EMAGE:11331 EMAGE:11331 EMAGE:11331
euxassay_003551_05 euxassay_003551_06 euxassay_003551_07 euxassay_003551_08 euxassay_003551_09
EMAGE:11331 EMAGE:11331 EMAGE:11331 EMAGE:11331 EMAGE:11331
euxassay_003551_10 euxassay_003551_11 euxassay_003551_12 euxassay_003551_13 euxassay_003551_14
EMAGE:11331 EMAGE:11331 EMAGE:11331 EMAGE:11331 EMAGE:11331
euxassay_003551_15 euxassay_003551_16 euxassay_003551_17 euxassay_003551_18 euxassay_003551_19
EMAGE:11331 EMAGE:11331 EMAGE:11331 EMAGE:11331
euxassay_003551_20 euxassay_003551_21 euxassay_003551_22 euxassay_003551_23

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:11331Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
11331_wholemount_strong.wlz
11331_wholemount_moderate.wlz
11331_wholemount_weak.wlz
11331_wholemount_possible.wlz
11331_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:11331_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T7407
Entity Detected:Snapc2, small nuclear RNA activating complex, polypeptide 2 ( MGI:1914861)
Sequence:sense strand is shown

>T7407
GAGCCCCGCAGTGTCCCGCTATGAAGCCACCGCAGAGACGGCGGAGGGTCCCAGCACGCTACGTAGGTGA
AGCTACGGGCCCCACCGCTTGGAGCCCCCGCGAGATGCGGCATCTACTGAGACTACTTCAGGCTCGGCGG
GGCCAGCCGGAGCCAGACGCCGCGGAGCTGGCCCAGGAGCTGCGAGGCCGCAGCGAGGCCGAGATCTGTC
GCTTTATCCAGCAGCTCAAGGGCCGGGTGGTTCGAGAGGCCATTCAGAAGATGCAGCCAGGTGGCAGAGA
GGGGCCAAGGCATCAAGGAACACCGCTCCCAGCCCCGGTAGAGGTATGGATGGATCTTGCTGAGAAACTA
ACAGGCCCAATGGAGGAAGCCCTGACTGCAGCTTTCTCCCAGGTGCTCACCATTGCTGCTGCAGAACCCC
TCAGCCTCCTGCACTCCAGGCCAGGCAAGCCCACAAAGGCCCGTGGAAAGGCACTGGTGTTCTTGAGCAA
CCAAGATGGGCAGAAGGATCCTGCATCTGAAGGTTCTGGGCCTGTCCCCATGACTGCTGCTGACCCTACT
CGTGAGGCTTCTGTCTCTGACCCTAAGGCCTCTGGAGCCAACCCTGAGACCTCTGGCCTTGCCTCAGAGG
TCACTGTCCCTGACCCTGATGCCCCAACCAAGTCCCTGGCTGGATCCTCCACAGAGAGAGACCTTGCTGT
GGACTTTGAGAAGATCTACAAATACCTTTCCTTCTCCTCCAGAGGTGGCCATGGCCCTGAGCTCTCAGCA
GCTGAGTCAGCTGTGGTCCTTAACCTGCTCATGGCACTTCCAGAGGAACTGTCCCACCTGCCTTGCACGG
CCCTGCTGGAACATATGACCAAAACATATGCTCAACTGATGGCTCCCCAGACCGCTCTCCCTGGAGAGAA
GAGGCCCAGGCCTGGGACTGAAGATGGAGGGACTGGCTCCACAGGGCCAGAGGAGCCTGACCAAGCTAGT
CCTCAAGCTTCTGAGCCCATAGAGCCGAGGCTGGCCTGGAAAGCAGTTGGGATCTGCCCACTGAACCCGT
TCCTGGTACCCCTGGGCCTCGTGAGCCAGGCCCCCAGCCCTTCGAGGTGAAGAGTACAGCAGACGAGATG
TGCTGAGTTTTGCCCAGAACATCAGTCCAGCACCACTGGTGTTGGAACTTGATTGTGGACTTCCTGACAC
AGTGTTCAGCCATAGGCTAAGCCTTCAGATGCTGTATACACCAGCAGCCTTAGAAAGTGAAGCACAATTG
TGATGAATGAGGGCTGGAGAGACGGAAGGCTCTACACAAAGCAGGATTCCTGCACTGGTAGATTGGGGCA
AGTGTCTCTAGCCCACTGTGCCTATTCTCTGCCATAATAGCAGCACATCATTACCCCTTTGTGTGTGGCT
CTAGCATCTGGATCCCCCCCAGCACACTCTCCCCACCTCAGTGGACCTCTGGATGGTTCTCTTCACCTTT
TCCTGGGGTGTCCTGTAACCCTCAATAAAGCTATCATCTACCTAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:4194905 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:4194905 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:11330 same embryo
 EMAGE:11334 same embryo
 EMAGE:11332 same embryo
 EMAGE:11329 same embryo
 EMAGE:11333 same embryo
 EurExpress:euxassay_003551 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS