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EMAGE:11413

Nagk N-acetylglucosamine kinase ( MGI:1860418)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:11413 EMAGE:11413 EMAGE:11413 EMAGE:11413 EMAGE:11413
"Pseudo-wholemount" of euxassay_003545. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_003545_01 euxassay_003545_02 euxassay_003545_03 euxassay_003545_04
EMAGE:11413 EMAGE:11413 EMAGE:11413 EMAGE:11413 EMAGE:11413
euxassay_003545_05 euxassay_003545_06 euxassay_003545_07 euxassay_003545_08 euxassay_003545_09
EMAGE:11413 EMAGE:11413 EMAGE:11413 EMAGE:11413 EMAGE:11413
euxassay_003545_10 euxassay_003545_11 euxassay_003545_12 euxassay_003545_13 euxassay_003545_14
EMAGE:11413 EMAGE:11413 EMAGE:11413 EMAGE:11413 EMAGE:11413
euxassay_003545_15 euxassay_003545_16 euxassay_003545_17 euxassay_003545_18 euxassay_003545_19
EMAGE:11413 EMAGE:11413 EMAGE:11413
euxassay_003545_20 euxassay_003545_21 euxassay_003545_22

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:11413Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
11413_wholemount_strong.wlz
11413_wholemount_moderate.wlz
11413_wholemount_weak.wlz
11413_wholemount_possible.wlz
11413_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:11413_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T6265
Entity Detected:Nagk, N-acetylglucosamine kinase ( MGI:1860418)
Sequence:sense strand is shown

>T6265
CCCACGCGTCCGGCGGGAGCGAAGTCACGGCTAGGGTCGAGGTTGCTACGGCGGACCAGCGGTGGCAACG
GTAGTATGGCCGCGCTTTATGGTGGCGTGGAAGGGGGAGGCACACGGTCCAAAGTCCTTTTACTTTCTGA
GGATGGGCAGATCCTGGCAGAAGCAGATGGACTGAGCACAAACCACTGGCTGATTGGCACAGACCAGTGT
GTGGAGAGGATCAATGAGATGGTGGACAGGGCCAAACAGAAGGCTGGAGTGGATCCTCTGGTGCCCCTTC
GAAGCCTGGGCCTGTCCCTGAGTGGTGGGGAGCAGGAGGATGCAGTGAGGCTCCTGATTGAGGAGTTGAG
GCACCGCTTTCCCAACCTGAGTGAAAACTACTTAATCACCACGGATGCAGCAGGTTCCATCGCCACAGCC
ACACCGGACGGTGGGATTGTGCTCATCTCTGGAACAGGCTCCAACTGTAGGCTTATCAACCCTGATGGCT
CCGAGAGTGGCTGTGGAGGCTGGGGCCACATGATGGGAGACGAGGGCTCAGCCTACTGGATTGCACACCA
AGCTGTGAAAATTGTGTTTGATTCCATCGACAACCTGGAGGCAGCTCCTCATGATATTGGCCATGTCAAG
CAGGCCATGTTCGACTATTTCCAGGTGCCAGATCGGCTTGGAATCCTCACCCATTTGTATAGGGACTTTG
ATAAATGCAAGTTTGCTGGATTTTGCCAGAAAATTGCAGAAGGTGCACATCAGGGAGACCCTCTTTCCAG
GTACATCTTCAGGAAGGCTGGAGAGATGCTGGGCAGACATGTTGTGGCAGTATTGCCAGAGATTGACCCG
GTTTTGTTCCAAGGGGAGCTTGGCCTCCCCATTCTGTGTGTGGGCTCAGTGTGGAAGAGCTGGGAGCTCC
TGAAGGAAGGCTTTCTCCTGGCGCTGACGCTGGGCCGAGAGCAGCAGGCACAGAACTCCTTCTCCAGCTT
CACCCTGATGAAGTTGCGGCATTCTTCTGCATTGGGGGGTGCCAGCCTGGGGGCCAGGCACATTGGATAC
CACCTTCCCATGGACTACAGTATCAATGCCATTGCCTTCTATTCCTATACCTTCTAGAGTCTGTCCCCCT
GCCCAACCAGCCAACACCGAGAGCTGGGAGACTTTCCTTTTTAAAAAACACATATGGAAGAAAATAAATG
CACTTTACTCCTTCCCTAAAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:3501470 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:3501470 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:11412 same embryo
 EMAGE:11409 same embryo
 EMAGE:11410 same embryo
 EMAGE:11411 same embryo
 EMAGE:11408 same embryo
 EurExpress:euxassay_003545 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS