EMAGE mouse gene expression spatial database

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EMAGE:11979

Naip5 NLR family, apoptosis inhibitory protein 5 ( MGI:1298220)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_010947. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_010947_01	euxassay_010947_02	euxassay_010947_03	euxassay_010947_04

euxassay_010947_05	euxassay_010947_06	euxassay_010947_07	euxassay_010947_08	euxassay_010947_09

euxassay_010947_10	euxassay_010947_11	euxassay_010947_12	euxassay_010947_13	euxassay_010947_14

euxassay_010947_15	euxassay_010947_16	euxassay_010947_17	euxassay_010947_18	euxassay_010947_19

euxassay_010947_20	euxassay_010947_21	euxassay_010947_22	euxassay_010947_23	euxassay_010947_24

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

11979_wholemount_strong.wlz

11979_wholemount_moderate.wlz

11979_wholemount_weak.wlz

11979_wholemount_possible.wlz

11979_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:11979_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Annotation Validation:

spatial mapping by EMAGE editor

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T9347
Entity Detected:	Naip5, NLR family, apoptosis inhibitory protein 5 ( MGI:1298220)
Sequence:	sense strand is shown >T9347 CAACTGCTCACCTTTCCCCTTTAGAAAATGGCTGAGCATGGGGAGTCCTCCGAGGATCGGATTTCTGAGA TTGATTATGAATTTCTCCCCGAGCTCTCTGCTCTTCTCGGGGTGGATGCATTTCAGGTGGCAAAGAGCCA AGAAGAAGAAGAGCATAAAGAACGGATGAAAATGAAGAAAGGTTTTAACTCACAGATGCGCAGTGAAGCC AAACGACTAAAGACCTTTGAGACCTATGACACGTTCAGATCATGGACGCCACAGGAGATGGCAGCTGCTG GGTTTTACCACACAGGGGTGAGACTTGGCGTTCAGTGCTTTTGCTGTAGCTTGATCCTCTTTGGTAACAG CCTCAGGAAGCTTCCCATAGAGAGACACAAGAAATTACGTCCGGAATGTGAGTTCCTTCAGGGCAAAGAT GTTGGTAACATTGGCAAGTATGACATCCGGGTGAAGAGGCCAGAGAAGATGCTGAGAGGTGGCAAAGCCA GGTACCATGAAGAGGAGGCCAGACTGGAGTCCTTTGAGGACTGGCCATTTTATGCCCATGGGACATCACC ACGTGTACTCTCAGCAGCTGGCTTTGTCTTTACAGGTAAAAGGGACACTGTGCAGTGTTTCTCCTGTGGC GGAAGCTTGGGCAACTGGGAAGAAGGAGATGACCCCTGGAAGGAGCATGCCAAGTGGTTCCCCAAATGTG AATTTCTTCAAAGTAAGAAATCCTCAGAGGAAATTGCCCAGTATATTCAAAGCTACGAGGGATTTGTTCA TGTAACGGGAGAACATTTTGTGAAGTCCTGGGTCAGAAGAGAATTACCTATGGTATCAGCTTACTGCAAT GACAGTGTCTTCGCTAATGAAGAACTAAGGATGGACATGTTTAAGGACTGGCCCCAAGAATCACCTGTGG GTGTTGAAGCTCTAGTCAGAGCAGGCTTTTTCTACACTGGCAAAAAGGACATTGTCCGGTGTTTTTCCTG TGGAGGATGTTTGGAAAAGTGGGCAGAAGGTGACGACCCAATGGAAGATCACATCAAGTTTTTTCCCGAA TGTGTATTTCTTCAAACCTTGAAGTCCTCTGCAGAAGTAATTCCAACCCTTCAGAGCCAATATGCACTTC CAGAAGCCACGGAAACCACACGTGAAAGCAACCATGGTGATGCAGCAGCAGTTCATTCTACAGTGGTGGA CTTGGGTAGGAGTGAAGCCCAGTGGTTTCAAGAGGCCAGGAGTCTGAGTGAGCAGCTAAGAGACAACTAC ACTAAAGCCACTTTCCGCCACATGAACTTGCCAGAAGTGTGCTCCAGCCTTGGCACTGACCACTTGCTCA GCTGCGATGTGTCCATCATTTCAAAGCACATCAGCCAGCCTGTGCAAGAGGCCCTGACGATCCCCGAGGT CTTCTCCAATCTCAACTCTGTCATGTGTGTGGAGGGGGAAACTGGCAGTGGAAAGACAACCTTCCTGAAG AGGATAGCTTTTCTCTGGGCATCAGGATGCTGCCCCCTGTTGTACAGGTTCCAGCTGGTCTTCTATCTCT CCCTTAGTTCCATCACACCAGATCAGGGACTGGCCAACATCATCTGTGCCCAACTCCTAGGGGCAGGAGG TTGCATTAGTGAAGTGTGTCTGAGCAGCAGCATCCAGCAGTTACAACACCAGGTGCTGTTCCTGTTGGAT GACTACAGTGGGCTGGCCTCACTCCCCCAAGCCCTACACACACTGATTACAAAAAACTACTTGTCACGGA CCTGCTTATTGATCGCTGTGCATACAAACAGGGTCAGAGACATCCGCCTATACCTAGGTACAAGTCTAGA GATCCAAGAGTTTCCCTTCTATAATACTGTCTCTGTATTACGGAAGTTTTTTTCACATGACATAATCTGT GTGGAAAAGCTTATAATTTACTTTATTGATAATAAAGATTTACAGGGAGTTTACAAGACCCCTCTCTTTG TAGCAGCAGTATGTACTGACTGGATTCAAAATGCATCTGCCCAGGATAAATTTCAAGATGTGACACTTTT CCAGTCCTACATGCAATACCTGTCCTTAAAATACAAAGCTACAGCTGAGCCTCTCCAGGCCACTGTGTCC TCATGTGGGCAGCTGGCCTTGACAGGGCTTTTCTCATCATGCTTTGAGTTCAATAGTGATGACCTGGCAG AGGCAGGAGTTGATGAAGATGAAAAGCTTACCACCCTCTTGATGAGCAAATTCACCGCCCAGAGACTGAG ACCAGTCTACCGGTTTTTAGGTCCTCTGTTCCAGGAGTTTCTTGCTGCCGTGAGGTTGACTGAACTCCTG AGTTCAGATAGGCAGGAAGACCAAGATCTTGGACTTTATTATTTGAGACAAATCGACTCACCTCTGAAGG CAATAAACTCCTTTAACATATTTTTGTATTATGTCTCCAGCCACTCTTCCTCAAAGGCAGCGCCAACAGT TGTATCTCATTTGCTTCAGTTGGTGGATGAGAAAGAGTCACTGGAGAACATGTCTGAAAATGAGGATTAC ATGAAGCTCCATCCACAAACTTTTCTATGGTTTCAGTTTGTTAGAGGGTTGTGGCTGGTGTCTCCTGAAT CTTCCTCTTCATTCGTTTCAGAACATTTATTGCGCCTTGCTCTAATCTTTGCTTATGAAAGCAACACAGT TGCTGAATGCTCTCCATTTATTTTGCAATTCCTTCGAGGAAAAACACTGGCTTTAAGAGTACTGAATTTA CAGTACTTTAGGGACCACCCAGAAAGCCTGTTACTGTTGAGGAGCTTAAAGGTTTCCATAAATGGAAATA AAATGTCATCTTATGTAGATTATTCATTCAAGACATATTTTGAAAACTTACAGCCACCAGCTATAGATGA GGAGTATACATCTGCCTTTGAGCATATAAGTGAATGGAGGAGAAATTTTGCTCAAGATGAGGAGATCATA AAAAACTATGAAAATATCCGACCCAGAGCCCTACCAGACATCAGTGAAGGGTACTGGAAACTGTCCCCCA AGCCATGCAAGATCCCCAAGCTGGAAGTTCAAGTGAACAACACGGATGCAGCAGATCAAGCACTGCTCCA GGTCCTCATGGAAGTCTTCTCAGCTTCACAGAGTATTGAGTTCCGTTTATTCAACAGCAGTGGCTTCCTT GAAAGCATCTGCCCAGCTCTGGAGCTGAGTAAGGCCTCTGTCACCAAGTGTTCCATGTCCAGGCTGGAGC TCAGCAGAGCAGAACAGGAGCTGCTTCTCACCCTGCCTGCCCTGCAGTCTCTCGAGGTCTCAGAGACAAA CCAGTTACCAGAACAGCTCTTCCATAACTTGCACAAGTTCCTGGGCCTGAAAGAACTGTGTGTGAGACTA GATGGCAAACCGAATGTGCTCTCAGTCCTTCCTAGAGAGTTCCCAAACCTCCTTCACATGGAGAAGTTAT CCATCCAAACCTCCACGGAGTCTGACCTCTCCAAACTAGTTAAATTCATCCAGAACTTTCCAAATCTCCA TGTTTTCCATCTGAAATGTGATTTCCTTTCAAATTGTGAGTCTCTCATGGCTGTGCTTGCTTCCTGCAAG AAACTCAGAGAGATTGAGTTTTCTGGACGATGCTTTGAAGCCATGACCTTTGTCAACATTTTGCCAAATT TTGTTTCTCTGAAGATACTGAATCTTAAAGATCAACAATTTCCAGATAAGGAAACGTCAGAAAAGTTTGC CCAGGCTCTGGGTTCTCTCAGGAACCTGGAGGAACTGCTCGTTCCCACTGGGGACGGGATTCACCAAGTG GCCAAACTGATTGTCCGGCAGTGTCTGCAGCTTCCGTGCCTCCGAGTTCTCACCTTTCACGACATCTTGG ACGATGACAGTGTGATTGAAATTGCCAGGGCGGCAACCAGTGGAGGTTTCCAGAAACTTGAGAACTTAGA TATTTCCATGAATCACAAGATTACCGAGGAAGGATATAGAAATTTCTTTCAAGCCCTGGACAACTTGCCA AACCTACAAGAGCTGAACATCTGCAGGAATATCCCAGGACGCATTCAAGTTCAGGCCACCACTGTCAAGG CTCTGGGTCAATGTGTGTCCCGACTGCCCAGCCTCATCAGACTGCACATGCTCAGTTGGCTCCTGGATGA AGAGGACATGAAAGTGATTAATGATGTGAAGGAAAGACATCCCCAGTCTAAACGCTTGATTATCTTCTGG AAATTGATAGTCCCATTCTCTCCTGTTATCCTGGAGTAAAGGATGCTCCTGAAGACTACTGACAGTTCAG AATATCTAAAACTCCTAAAATTCTAGCTGAGGTCAGAAAAGTATGTTGGGCCCTCCTGGGTCTGGAGTTA TAGATAGTTAAGAGTCTCCATTTGGGTGCTGGTCACCAAACCTTTATCCTCAGTAAAAGCTACAGGTGCT CTTAAACCCTGATCCATCTATCCGAAGGCTGATAATTTTTTTTTGAAAATCTACATGCTCATCACTGAGC TACAATGAACAGTGCCTTTTTAGTCCTTGTATATTTCTCCTGTCTAAAGACTAGAGTTTCCTTCAAGTTC ATACAAGGAACCTTCCAATACCAAGGTCAACAGGAAAGGGCTGGTGAAAGGAACATTGATCTATGTAAAG CCAAGACATCATAGGAGCACTGGGTGGAGGATATACATGGTCTGTTTATAGATTGAATCAGCCTTGTACA TGAGGAAGCATGTGTTGACTTTATCATGGCTGCAGCTGACTCTCTCTCCAGGAGATGCTCTTTAGTCTTT GCAGCACTTTTGCGTATTCATTAGCCTTGATGTGGTTGTGCATCTATTGCCAATGGGTGGGGGGATATTG GGCTTAGAGAAAACTGCTTTTGTTTATGAGAGTTTTTGATAATTTTGCATGTACTGTAATGGCCTTGTGA TTTTCTTAGAAACTCATGGTCAGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGCTCTTCTGAA GGTCCTGAGTTCAAATCCCAGCAACCACACGGTGGCTCACAACCATCTGTAATGAGATCTGATGCCCTGT TCTGGGGTGTCTAAAGATGGCTACAGTGTACTTACATAGAATAAAGAAATAAAATCTTAAAAAAGAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAA
Notes:	The probe template was PCR amplified from IMAGE:6850660 using vector (pYX-Asc) specific primers. Forward Primer - name:RZPD T3, sequence:ATTAACCCTCACTAAAGGGA; Reverse Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:6850660 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:11976 same embryo
	EMAGE:11978 same embryo
	EMAGE:11977 same embryo
	EMAGE:11975 same embryo
	EurExpress:euxassay_010947 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source