EMAGE mouse gene expression spatial database

Quicksearch Help

(Click the icon to keep this page displayed.)

EMAGE:12213

Tbc1d5 TBC1 domain family, member 5 ( MGI:1919488)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


euxassay_007172_01	euxassay_007172_02	euxassay_007172_03	euxassay_007172_04	euxassay_007172_05

euxassay_007172_06	euxassay_007172_07	euxassay_007172_08	euxassay_007172_09	euxassay_007172_10

euxassay_007172_11	euxassay_007172_12	euxassay_007172_13	euxassay_007172_14	euxassay_007172_15

euxassay_007172_16	euxassay_007172_17	euxassay_007172_18	euxassay_007172_19	euxassay_007172_20

euxassay_007172_21	euxassay_007172_22	euxassay_007172_23	euxassay_007172_24

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

12213_wholemount_strong.wlz

12213_wholemount_moderate.wlz

12213_wholemount_weak.wlz

12213_wholemount_possible.wlz

12213_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:12213_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Annotation Validation:

spatial mapping by EMAGE editor

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T8783
Entity Detected:	Tbc1d5, TBC1 domain family, member 5 ( MGI:1919488)
Sequence:	sense strand is shown >T8783 GAGAGAGAGAGAGAAAGGAGGGGAGGAGGATTCAGGGAATAGGAGCTGGGGAGCCCTGCTGCGCTACAGA AAATTTCTAATGACTTGGTGAAGATAGGAAAACCGTCAGAAAGGCTGAAGTACTGCCATACTACAATTAC TTCGGTGACTGTCTCCACTCTATGCAATGTATAAGTCTGTGTCTGAAACGAGACATCCTCTGCAGTCAGA AGAACAAGAAGTAGGCATTGACCCCTTGTTCAGTTATTCAAATAAAACAAGAGGAGATCTAAGTCAAAAT GGAAGAGGATCAAATTCTACCTTAGACACTGAAGGGACGTTCAATTCATATATGAAAGAATGGGAAGAAC TATTTGTAAACAACAATTACTTGGCAACAGTAAGACAGAAGGGGATTAATGGGCAGCTGAGAAGCAGCAG GTTCCGCAGCATTTGCTGGAAGCTCTTTCTTTGTGTTCTTCCTCAAGATAAAAGTCAGTGGATAAGTAAA ATCAAAGAACTAAGAGCCTGGTATAGCAGTATTAAAGAAATACACATCACTAACCCAAGGAAGGCTGCCG GCCAGCAGGATCTGATGATCAACAACCCCCTATCACAGGATGAAGGAAGTCTTTGGAACAAGTTCTTTCA AGATAAAGAACTACGGTCCATGATTGAGCAAGATGTCAAAAGAACGTTTCCTGAAATGCAGTTTTTCCAA CAAGAAAATGTGAGAAAAATTCTTACAGATGTTCTGTTCTGCTATGCAAGAGAGAACGAGCAGTTGCTTT ACAAACAGGGTATGCATGAGCTACTAGCGCCTATCATCTTTACCCTCCACTGTGACCACCAAGCTTTTCT ACATGCCAGCGAGTCTGCACAGCCCAGTGAGGAAATGAAAACTCTCCTGAACCCTGAGTATCTGGAGCAT GATGCCTATGCAATGTTCTCACAGCTTATGGAAACTGCTGAACCTTGGTTTTCTACGTTTGAGCATGATG GTCAAAAGGGAAAAGAAACTCTGATGGCCCCCATTCCCTTTGCTCGACCACAGGATTTAGGGCCAACAGT TGCCATTGTTACAAAAGTCAACCAGATCCAGGACCATCTACTGAAGAAACATGATATTGAGCTCTACATG CACCTGAACAGACTAGAAATTGCACCACAAATATATGGGTTACGATGGGTGCGGCTGCTGTTTGGCAGAG AGTTCCCTCTGCAGGACCTGCTGGTGGTCTGGGATGCCCTGTTTGCGGATAGCCTCAACCTGAGCTTAGT CGACTATGTCTTCACAGCCATGCTACTCTATATCCGAGATGCTTTGATTTCTAGTAACTATCAGACCTGT CTTGGCCTTCTGATGCATTATCCAATCATCGGGGACATACACTCACTGATACTGAAGGCTCTGTTCCTTA GAGACCCAAAGAGAAATCCAAGGCCGGCGACTTACCAGTTCCACCCCAACTTAGACTACTACAAAGCACG GGGAGCCGACCTTATGAACAAAAGCCGGACCAATGCCAGAGGTGCTCCCCTGAATATACACAAGGTCTCC AACAGCTTGATTAACTTTGGAAGAAAGCTGATTTCCCCAGCCTCAGCTCCGGGCAGTATGGGTGGCCCTG TACCCGGAAACAACAGCAGCAGTTCCTTCTCTGCTGCCATCCCCACCAGGACCTCCACAGAAGCCCCAAG GCATCATTTGCTGCAGCAGCAACAGCAGCAGCAGCACCAGCAGCAGCAGCAGCAGCAACCACAGCAGCAG CAGCAGCAACACCAGCAGCAACAGCAGCAGCAGAGACTGATGAAATCTGAAAGCATGCCGGTACAGTTGA ACAAAGGGCAAAGTTCGAAAACCATCAGTTCATCTCCAAGTATCGAGAGTTTGCCTGGGGGAAGAGAATT CACTGGCTCTCCACCTCCATCCGCTACTAAAAAGGATTCCTTTTTCAGCAACATCGCACGTTCCCGTTCA CACAGCAAAACCATGGGCAGGAAAGAGTCTGAAGAAGAACTAGAGGCTCAGATCTCCTTCCTACAAGGCC AGCTGAATGACCTGGATGCCATGTGCAAGTACTGTGCAAAGGTCATGGACATGCATCTTGTAAACATTCA AGATGTGGTATTACAAGAGAATTTGGAAAAAGAAGATCAAATTCTGGTGTCCTTGGCAGGATTAAAACAG ATCAAAGACATTCTGAAAGGTTCCCTGCGCTTCAACCAGAGCCAGCTGGAGGCTGGCGAGAATGAGCAGA TTACCATCGCTGATGACCACTACTGCTCCAGTGGCCAGGACCAGGGCAGCCAAGTTCCTAGGGCCGCCAA GCAGGCCTCTTCAGAGATGCCAGGGTGCACCGGTGGAACGACCCCAGATGACTTCATTCTGGTTTCCAAA GAAGATGAGGGGCACCGTGCCAGGGGGGCCTTCTCAGGCCAGGCCCAGCCTCTTCTCACCCTCAGAAGCA CATCTGGGAAAAGCCGAGCCCCATCCTGCTCCCCACTGCTGTTCTCAGACCCACTGATGGGCCCAGCCTC AGCCTCAGCCTCCTCCAGCAACCCCAGCTCCAGCCCCGATGATGACAGCAGCAAGGAGTCTGGCTTCACC ATTGTGAGCCCCTTGGACATCTGAGCACAGGGCCCCACTGGCGGACACCCTGCTGAACCAGTGTCTTTTT CCCAGCATGCATTTGGCATTGGTTCAACCCACTGGAACTCTTTACAAAAAGAGGCAACTATGCTTCTTTC AATGCACTATGTTTACCAAAATGCAGATAGAGGTTTCCAGACCCTTACCTGACCCTGTGACCCTTGTTCC AATTAGGGCCAGGTCAGGTCCCCAGCTCCATACCCACTGTCAGACACAGCAGACCACATCAGAGCCACAT GTCTTCCGTCCCCTCCTCCCCAGCAGCTCTGCCAGTTTACACTCAGAAGGAAAAGTTGGTTTCACAACTT CCCCTTATCAAAGCTTCAGCCACAGGGAACTTGTTGATACTGAGTGAATCTGGCAGGCAGTCTCACTCCT GCCTTGGAAGCCCAACATGCCACACAGAGGGAGCAGAGCGGGTGGCTCCCAGGGCTGGAGTCAGAGTGAA TTGTAGGAGCAGGGTTTCAGATTAGGAATCAGATTCTTGTTTGACACAAATACAGTTCTGGACCCTGGGC TTCCTAAGCTTCAGCCACCGCTGTTCCTCCTTGAACAACTGGATTTCTCCTTCCAGAGTCCCCACAGCCG GGAGTGCAGTGGCTCCACGCCAGTCTGCTCTGAGATGGTTTTAAGAGTCACAGGGCTAACATCCTTGAAT TGGAGAAATGTGTCCAGAGCTCTCCGGTCAGGTCTCTGAGCATGTTTAGAGCTACAGTGGCCTGTTAAAT GAGGAGCACAGAGGAAAACCACATTCGCACAACCCGGAGTCAGACCTCCTGGGAATTAGACCTGGAGTTC CTTCTGTGGGAGCAGGTTTCCTGTAGAGCGTTCCAGGTACCACAAGATACAGGGCTCCTATTCAACCCCC AACACCCTATTCTTGGAGCTCAGCTGTAAACTCTGCATCCAGACACTCCAAGGATGGGCCTGCCTGCCTC GGGGCCCCTGCCTGGGCTGGGTATACATGAGACATCTCCCCGTCTATTGGCCGAGTACAGAGCTGTATTG GGCACAAAGCTAGGGACAGTGGAAATGGTGGATAGATGTAGCATCTGTTAGATGTCACCTCTGCCTTCTG TCCTCCTCAGAGAGCAGCTGGGCCTCTGGGCAGTGCCCCACCCACTAATAGCATTGTAATTCTCTACAGA CAGGAATGCTAATGTCAGGATGCTCTGCAGGCTTCTTAGCTGTACTGCATAGCAGGGCTGGTGGCTCACT CACATGGTGGCGGGGCTCAGTCATGGCCTCATGAATTCTACCCCCTGCCTCTGACCAGTCTTCTCAGCAT TCTGAGGAGCCTGCTTGCATACATGTCCCATGAAGCTGCTCTGTAAGAATCAGGGCCACCATCCATCCCT GCTAGAAGGCTTCCAGCAAGCATTCCACTTAAAGCCTTGACATAACCGTGTCAGTACCTTAGATCTAGTG TGGGAAGTATTGACTGATCCATCCAGGTCTGGGACAGTGCCGGCCATGTCTGTCACTGCTGAGCCCTGTC CCCAGCATCTCCTTTGCGTTGAGAATAAGGTCAATAGATAACTATCACTGGCTACCCACCAGGCCAAGAA GATGATAGGCTGACCCATTACTGTTTGAATGGACATTTCATAACCCCTCGACCTACCTGCCCTGCCCATG CCCGTGATGTGCCCCGCTCCTGTGCTTGTGTGGGTGCCACATGAGAACCCCAGGTTCACACTGAGATGTT TCTATGGTCCCTAGGCAGGCCACTCTCTCCTTGGAAGAACCAAGGATGGAAAGCTCTTCTCTAAGTGACT CTATTCTTCGTTGGTGACCATTGCTTCCCTTGGTTACCTACACTGCTGGTTTGGGATGCATTCCGTCCCT GTTATTTTATCAGGTACTTCTGTCTAATTGTACATTTTAAAGTCCTGGATATATAGAACCTTTTTCTTTA ACCACATGGTAATCATCAGTTTTAATCTCTCACATTTTGATTATAGCAGCTAATACAGTTTTATACAAGC CAAGCCTAGATTAAGCCCTACTGTCGTCTGCTTTTTTATACACATTTCTGTGTTTCATGCAGTCCTCTCT GATCAGATTGGAAGTGTGAAGTAAAACATACCTGTGTGCCACAGAGGGTCGGTTCAGTGCCTCGGTTCAG TTCTCGAGAACTTCCTGGCTTAGCTTGGCAAGATGACCTTCTGCTCTGCACTAACTGCAACTTGAAGTGA CCACACTGCTGCTGAGTGTAACTCTGGAGGGCAGCTGCCTCCCCGGAGCCCAGTTCTCGTAGGGGTGAAT CTCCTCCGCACGGGTTGGCTGTGCTGGACAACCTTGCCAGCCATGTCTTTAGTGTCAGAAAGGCTGGACA AATGCCAAAACTCTAGTATAACCTGCTGTTCAGTACAGGTTGCTTTTGCTTGCTAAAAGCTCTCCCAGTG GCCACTAAAGACAAAGCGGGGAGCACCTGTGGCCCTGCACCGGCCAGTGCCATCTCCCTTCCCCACCCTG GAACTGCTAGGAAATGAGAGCTGGGGAAGAGGCCATGTGCATGGAGAGCTGTGGCGGCAGGCTCTTCACA GATCACATGGCCTCCTCCATGCTAGGCCCAAAAGCTGCTTCTCTCTTGTTGAAAAGAGGTGTCGTTCCTA TAACCAGGCTGGTGTGGAAGTTTTCCTTCGGTGCATGAGGCTCGGCTCATCTAGTTGATATCCCAGCAGT GCCAACAATGTCCTCACGAGCCTTGGTGCCGGAGCTCATACTGATGTAGGAAATGCCTCCTTGGCAGAGC GAGCCCACTTGATGTGTACTAATAAAGGACTACTGAGAACTAAGAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Notes:	The probe template was PCR amplified from IMAGE:6407234 using vector (pYX-Asc) specific primers. Forward Primer - name:RZPD T3, sequence:ATTAACCCTCACTAAAGGGA; Reverse Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:6407234 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:12209 same embryo
	EMAGE:12214 same embryo
	EMAGE:12211 same embryo
	EMAGE:12210 same embryo
	EMAGE:12212 same embryo
	EurExpress:euxassay_007172 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source