EMAGE mouse gene expression spatial database

Quicksearch Help

(Click the icon to keep this page displayed.)

EMAGE:12214

Pcyox1l prenylcysteine oxidase 1 like ( MGI:3606062)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


euxassay_008282_01	euxassay_008282_02	euxassay_008282_03	euxassay_008282_04	euxassay_008282_05

euxassay_008282_06	euxassay_008282_07	euxassay_008282_08	euxassay_008282_09	euxassay_008282_10

euxassay_008282_11	euxassay_008282_12	euxassay_008282_13	euxassay_008282_14	euxassay_008282_15

euxassay_008282_16	euxassay_008282_17	euxassay_008282_18	euxassay_008282_19	euxassay_008282_20

euxassay_008282_21	euxassay_008282_22	euxassay_008282_23	euxassay_008282_24

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

12214_wholemount_strong.wlz

12214_wholemount_moderate.wlz

12214_wholemount_weak.wlz

12214_wholemount_possible.wlz

12214_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:12214_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Annotation Validation:

spatial mapping by EMAGE editor

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T8735
Entity Detected:	Pcyox1l, prenylcysteine oxidase 1 like ( MGI:3606062)
Sequence:	sense strand is shown >T8735 CGCTAGAGGCCGATCCGGAGCGTGCTGCCCGGTCACCACCCGCCATGGCCCGCGCTGCCCCGCTGCTCGC CGTGCTGGCCACAGTCCTCACCACCGCCGCTGCAGGCGGAGACGCACCGCCGGGGAAAATCGCTGTTATC GGAGCTGGGATCGGGGGCTCTGCTGTGGCCCATTTCCTTCAGCAACACTTCGGACCCCGAGTGCAAATTG TCGTCTATGAGAAAGGGACTGTGGGTGGCCGCCTGGCCACCATCTCCGTCAACAAGCAGAACTACGAGAG CGGGGCGGCCTCCTTTCACTCTCTGAGCCTCCACATGCAGGACTTCGTCAAGCTGCTGGGACTGAGACAG CGGCGCGAGGTGGTGGGCAGAAGCGCCATCTTTGGCGGCGAACATTTCGTGCTGGAGGAAACCGACTGGT ACCTGCTGAATCTCTTCCGCCTCTGGTGGTACTACGGCATCAGCTTCCTGAGGCTGCAGATGTGGGTAGA GGAAGTCATGGAGAAGTTCATGAGGATCTACAAGTACCAGGCTCACGGCTATGCCTTCTCGGGGGTAGAA GAGCTACTCTACTCACTGGGGGAAGCCACCTTTGTCAACATGACCCAGCGGTCCGTGGCCGAGTCCCTGC TCCAGGTGGGCGTCACACAGCGCTTTATTGATGATGTCGTCTCTGCGGTCCTACGGGCCAGCTATGGCCA GTCGGCATCAATGCCCGCCTTTGCTGGAGCCATGTCCCTAGCTGGGGCTCAGGGCAACCTGTGGTCCGTG GAAGGGGGCAACAAGCTGGTTTGTTCTGGTTTGCTGAAGCTCGCCAAGGCCACCGTGATCCACGCCACGG TGACCTCTGTGACCCTGCACAGTACAGAAGGGAAAGCCCTGTACCAAGTGGCGTACGAGAGTGACAAGGG CAACAGCTCTGACTTCTACGACATCGTGGTCATCGCCACGCCCCTGCACCTGGACAACAGCAGCAACAAC AACATCACCTTTGAAGGCTTTACTCCGCCCATTGAGGACATTCAGGGCTCCTTCCAGCCCACCGTGGTCT CCCTGGTCCATGGCTACCTCAACTCTTCCTACTTCGGTTTCCCGGACCCTAAGCTTTTCCCCTTCGCCAA CATCCTCACCACGGACTTCCCGAGCTTCTTCTGCACTCTGGACAACATCTGTCCCGTCAACATCTCGGCC AGCTTCCGGCGGAAGCAACCCCAGGAGGCCGCCGTGTGGCGAGTGCAGTCCCCGAAGCCCCTCTTCCGCA CGGAGCTGAAGACCCTCTTCCGTTCCTATTACTCAGTCCAGACGGCGGAGTGGCAGGCCCACCCCCTCTA CGGCTCCCGCCGCACCCTCCCGAGGTTCGCCCTGCACGATCAGCTCTTCTACCTCAATGCCTTGGAGTGG GCGGCCAGCTCCGTGGAGGTGACGGCTGTAGCTGCTAAGAATGTGGCTCTGTTGGCTTATAACCGCTGGT ACCAGGACCTGGATAAGATTGACCAGAAGGACCTAATCCATAAGGTCAAGACTGAACTGTGAGGGCTCCC AGGAGAGCCCAGGGACTCTGCGCCACACTGAAGATAACTGAGATGGAGCGCACTCCAGCCGCGCAGGACT GACGAGGCCACACCCATGGGCTCTGTGGCTTTCTCTGCTCTCATGGATTGAACAGGGTCCCCCATGTGGG CCCGGGCGATCTGCTGTCTGCTTATCTAAGGATCCTCTTAGAGGCTGCCTTTTTTTTTTTTTTTTTTAAG GAGCGATTAAGAAAAGGGAAGGAAATTCAAGTCAGTGTTTTGGCTGTTTTTGTTTTTTGTTTGTTTGTTT TTGTTTGTTTTTTGTGGTGTTGGGTTTTGAGGTTTTTTGTTTGGTTGGTTTGGTTTTGGGATCGTGTGTT TATTTTATTGTTTTTGTTTTGGGGGGTTGGTCGTTTGTTGTTTTGGGGGGTTGTTTTGTTTTGTTTGTTT GTTGGTTACTGTTTTTCAAGAAGAAATATAAATTCATCCTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Notes:	The probe template was PCR amplified from IMAGE:6404883 using vector (pYX-Asc) specific primers. Forward Primer - name:RZPD T3, sequence:ATTAACCCTCACTAAAGGGA; Reverse Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:6404883 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:12209 same embryo
	EMAGE:12213 same embryo
	EMAGE:12211 same embryo
	EMAGE:12210 same embryo
	EMAGE:12212 same embryo
	EurExpress:euxassay_008282 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source