EMAGE mouse gene expression spatial database

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EMAGE:12292

A730011L01Rik RIKEN cDNA A730011L01 gene ( MGI:2444688)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_011010. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_011010_01	euxassay_011010_02	euxassay_011010_03	euxassay_011010_04

euxassay_011010_05	euxassay_011010_06	euxassay_011010_07	euxassay_011010_08	euxassay_011010_09

euxassay_011010_10	euxassay_011010_11	euxassay_011010_12	euxassay_011010_13	euxassay_011010_14

euxassay_011010_15	euxassay_011010_16	euxassay_011010_17	euxassay_011010_18	euxassay_011010_19

euxassay_011010_20	euxassay_011010_21	euxassay_011010_22	euxassay_011010_23	euxassay_011010_24

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

12292_wholemount_strong.wlz

12292_wholemount_moderate.wlz

12292_wholemount_weak.wlz

12292_wholemount_possible.wlz

12292_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:12292_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Annotation Validation:

spatial mapping by EMAGE editor

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T8424
Entity Detected:	A730011L01Rik, RIKEN cDNA A730011L01 gene ( MGI:2444688)
Sequence:	sense strand is shown >T8424 AGAGGGTGGGCTGGGAGGGGGGACGCCCCGAGCGTCGCGCTCTTCCCATGGGCCCTGAGCCCGTTTGATG TTCGTGTCCTATTAGGGAACAAGCCCGGCTGAAAGCGCGCGTGGTGGATCGGGACACGGAGGCCTGGCAG CGGGACCCCAGCTTCTCGGGCCTGCAGAAGGTCGGGGGCGTGGATGTGTCCTTCGTGAAAGGGGACAGTG TCCGGGCCTGCGCTTCCCTGGTAGTGCTGAGCTACCCCGAGCTCAAGGTGGTGTATGAGGACAGCCGCAT GGTTGGCCTGAAGGCCCCCTATGTGTCAGGCTTCCTGGCCTTCCGAGAGGTCCCTTTCCTGGTGGAGTTG GTACAGCGGCTGCAAGAGAAGGAACCAGATCTCATGCCCCAGGTCGTTCTTGTGGATGGAAACGGGGTGC TTCACCAACGAGGCTTCGGGGTGGCCTGCCACCTTGGTGTCCTTACAGAGCTGCCATGCATCGGGGTGGC CAAGAAGCTCCTGCAGGTGGATGGACTGGAGAACAATGCTCTGCACAAGGAGAAGATTGTGCTCCTGCAG GCCGGAGGAGACACATTTCCTCTGATAGGCAGCTCTGGGACTGTCCTGGGAATGGCCCTGAGGAGCCATG ACCACAGCACCAAGCCCCTCTATGTCTCTGTGGGCCACAGAATAAGCCTGGAGGTCGCTGTGCGCCTCAC CCACCACTGCTGTAGGTTCCGGATCCCAGAACCTATACGCCAGGCTGACATCCGCTCTCGAGAGTACATC CGAAGGACTCTAGGGCAGCTTGGGGTGGCTCCTGCACAGAGAAAGGACAGGAGCCAGAAAGAGCAGAGGC CAAATGCATGCCCCCAAGGAGGCCCAGGAGCACTTGCAGATCAAGGCAGGCCTCCTGAATGCGACGGCAG AGACTCCAGCTCAGACCGGAAAGCCCCCGAGCCAGGCTTCCAGGAGCAGAAGGACCAGCAGTTGGAGGGA ACCGGGCATCAGGAAGACTCGGACCTCTGGCCTCCTTCTCCAGCCTGGGTACAGTCACCACCCTGAGAAG ATGATCTCTAGGAGCAGTGGAGACCTCACCACAGTCACAGGTGGAGCACCACACCCCAGAGGCAACAGTG CATGGAACTCCAGGAGGATGCAGCGGGCTTAATCCAGCGTGGGCCAGTGTAGGCCAGTGGCTGCCAGCCT CCTCCATCACTGGCTAGTCAGTGTGGTCACCATGCCCCAGCAGGACCATATTCCAGACCAGGAAGCACAC ACAAGCACCAAGAGTACATGAAGGACTTCAGGCCTCGGGTGCCCAGAGGCCCTGCGGTTGGCAACCTGTG CCAGCAGCTCTGCCTTGCCCTCTTGGGAATACAGACCTGGTTCTTCCTGGCTTTACCCTCATGGGTCACT CTTACTTCACCATCCCAGCCACGGGAGACTGTCATCCGTGTCATAGCCAGGCTGCAGCCCCCAAGGTGCC TGTCCTCAAGCTTGTTTGCCGCTGAGCTTGAGGGACCTGCAGTTGGGAAAGCCTCAATCCTGGAGCAGGC TCAAGAGTGGGCGATGGGGAGTCAGCTGCACAGAGGGTGCCAGATGGGAAGCCGGTTGAGGCCCATGGTG AGAAAGCCCCAGGCTCGGCTCCTCACTCCTCTTCCTGCCACCCTCTCACCAGAGAGCGTCAAAATCCCAT CCCACTAAGAAGGCGGGTCTGTTCTAGCCTGGTGGCTTCTTGTCTGGGTGGCCTTGAAGGGGCTGCTGAG GCAGGCCAACAGCAGGGCTGCAGTGCCCTCCCTGTCCTCCCACACACATTCTAGGCTCACCAGAGTGGCA TCTGAGCTGGGACACAGAGATGGCACGCCTGTGACATGTCTCTTGCCCTCACCCTAGTCCCCAGATTCCC TGGAGGAGAGGTGACAGATGGTGGGGAAGCTAGCTACTAAGTCCTGTGGATACCCACAGGGGGTGGTCAG GATGGGATGACGGTCGGTGATGGGGAAGGACAGACGGGTGGTTCTCCTGTGATACCCAGGCCCATTTAGA CTCAGCTGGGCTGCTGCGACTCCCTCCTAAGTCAGTCCATAGTGACTACCCCTTGGGGGTAGGTCTGCTG CTGCTGTCTCTGATGGAGCTGGTGGCTCATCCCCACTCCCTGGGGTTTCAGGTTTTGGATATAAGGAAGA TAGATATGTGGTTCTGTCACCCAGTAAATGAAGTGTGGGGCAGGAGGCAGCCTCCCCACCACACACCTGG TATGTATAGGCCAGCCTCCATGGGCAAGAACCCCACGGCCACCCAGGGTGTCCGAGCAGGACATTCCTGC AGTGTCCACATCCACCCACTGGCCCTCCGCAGTCTCTCACAAACATTCTGTGCACACACACACAACCACA CATACACACTCTCTCTCTCTCTCTCTTCATATTCCCTGACACTCTTGTGGAAGCCAGAGCTGGAGGGCCT ACAGCTGGCCCCACCATCTGCCTTCCCAACTTCCAGACCTCTCCCTTCTCAAGCCCTGTCAAGACAGAGT TGTGGAGGGGGAATTTGGAGGTGGGGGAAGGAAAAGGCTGAAGCTCAACCACAATAGCTCGAACCATTGA AAGCTTAGATGTGAGGTGAGAAGTAAGGCAGCCGAGCTTGAGGGCCAGCACACAGCATCCTTGTTTGAAG GGAAGCTGTTTAGAGAAGTAGGGCCCCAGAGGCCAAGGCCATCAGTCCTTAAGACCATCCTCACAGATGT GGAGGAAAACAGCTTACAGAGTCCCCTGTCCAGGCCTCACCTGAGCAGGTAGCTCCTCCCACTCCTGTGA GACACCAAAGTGTGGCTGGGGACCCAGCCTGGTCACCCCATCTCATCTGTTCAACTCTTAACAGAAGACC TTCCCCAAGACACAGAAGTCAGGCCTGATGCTGCTCAGCTTGGCACCTTCCAACACTCAGACTCTCCTCA GCCTGGGCAGAGTAGCTCTCCAGGCTGCTGTACAGGCAGACACTGCCAGGGGCCCACTCCCCACATACTG AGGAGCAGGGCAGAACCTGAACGTGGCCTTCTAGACAACTTTTATGTGATTTGTTCTGAAAGAAAATCCT TTCAGTCATTAAAATACAATTTGTTTTGCACAGTGGAGTGTCTGGGGAGCCTGAGACCAGAGTCTCTGGG CATGGGCTCAAGGCAACCCTGAGTAACATAGGCCTGAGGCTTTGTCACAAACAAAAAGGATTCATTACCG TGTACAGCCATTATCACGCTTGCCTGCGCCAAAGCATTTCTATTGTCCCAAAGACAGCCCTGTACTATTA GCTTCTAGTACTCTCCCATACCCACAAGGGCCTGTCAGCCCAGCTGCCCCGCTGGGTGTGTGTGGCAGCC CAGATTTTACCTGGCTGAGCTGCTACAGGGAGCTAAGATAGTGAGGTGCCAGGGCCAGGGGGATGCAAAC TGAAGGAGCAGGGTGGATAGAACATAGAGTGTGGGCAAGTCTGGGGTGGGGCGTTCAGACACCCCAGACA CCGGTGCTTGAGGGCAGGGGGCCCTAAGTGCAGTGGCGTCTCAGCTCCTTCCCGCAGAACCTTAAAAATA GGGCCGCAGTGATGTCCATCTCAGCAGACCACAGCTCTCTAGAGCTAAGAATATTCTTGAACCTCTTAAT AATTCAAGTCAGATCCAAATAGATTTTCATATTCATCTGCAGTTTCTGTGCCCCTTCCCAGCATCCCTAC CCCTGTCCGGCAGCTGGGAGAAGTTGGCTTCCAGGGGGAGGCAACCTAAACTAGCTGCTGTGTCTGTCAC TCAGGACCCCAGTCATCCCCATTTCCTGCTCATGGGACAACAAGAATGGTGGACTGCCAGGGCTGGAGCC GCCTACTATGATCTAGCCATGGCCAACCCTGAGGAGAGAGGCCCAAGCCATCATGGTTCCTACATACCAG ACAGGCCAGGCTAGGGAACCTTGACCCTTCCTCAACACCTCAAGAGAGCCAATTGCTGTCTCCTGGCTTC TGGGGAGCCCATATGCTCCTTAGACCCCAATGGGAGCATACTGTCCTGCCTCCTCAGAAGAGTCCTTGAA GGGCTAGGTCTCGGGTTGAGACCTGGGGATTGCATCTGTACAGGGCTCCAGCCCCAGGTCTCTGTTCTTG AATGCTAAGTGTGCCTGGCCAAGTCACTCTGCCTCTGGGTGACTCTTTCCTTGATAGTGAGATGGTGGGT GTAGTGTCTCCAGAGTCAGCAGGATATCAGCCTGGACCACCTTCCCCTCCCGAGAGTGCCAGGGTGAACA CCCCCCCCCCAAAAACCCACTTGTCAGCCAAAGATCTGGTATCGAAGGTGAGGAGCAAGCATCAGCGTCG TAAGGTAGAGGCTTACCCACCTGGCCCACTCACCCCAGCAGCAACCCAATCCAGCATCCCCACTGCACTG CCCTAACCAATTGATTAATTAAAAGCAGAGGCACAGAACAGCGGCACGGGACCACTGACTTGCAGATGAA TGGCCCAAGAAGTAGTCAGGTGGGTGTCGCCGTGGTGATAGAATAGGACTCTGGTTCCCATTCCCCACAC AGAGCAGGCGCCCGCTGCTCCAGGTCCTTAAAGGCTCCTGGGAAATGGGAAGATAAAGTGCAGGAGCCGG GACTCCAGGCAGAGGCACCTGGATCAGGTCTTGATGGAGAGGGTGTAGTTTGGGCTTGGGCTGGGATTTT GTCTTGTTTTGTTTTAACAGGGTCTGATCACAGCAGAACTGGATGACCTTGAGCCTCTGGTCTTCCTTCT CCCAGCTCCTAGCAGTGGGGCCACATTGCAGGTCTATGCCACCACACTGATGCTGGAGATCAAAGCCAAG GCTCTGTGCTTGCTGAACAAACACGACCAACTGGGCTGGAGAGGTGGCTCAATGGTTAAGAGCACTGACT GCTCTTCCAGAGGTCCCGAGTTCAACTCCCAGCAACCACATGTTGGCTCACAACCATCTGTAATGGGATC TGATACCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTGCTCATATACATGAAATAAATAAATCTTTA AAAAAAAAAAAAAAAAA
Notes:	The probe template was PCR amplified from IMAGE:5697870 using vector (pYX-Asc) specific primers. Forward Primer - name:RZPD T3, sequence:ATTAACCCTCACTAAAGGGA; Reverse Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:5697870 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:12289 same embryo
	EMAGE:12288 same embryo
	EMAGE:12290 same embryo
	EMAGE:12291 same embryo
	EurExpress:euxassay_011010 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source