EMAGE mouse gene expression spatial database

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EMAGE:12310

Sftpc surfactant associated protein C ( MGI:109517)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_006980. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_006980_01	euxassay_006980_02	euxassay_006980_03	euxassay_006980_04

euxassay_006980_05	euxassay_006980_06	euxassay_006980_07	euxassay_006980_08	euxassay_006980_09

euxassay_006980_10	euxassay_006980_11	euxassay_006980_12	euxassay_006980_13	euxassay_006980_14

euxassay_006980_15	euxassay_006980_16	euxassay_006980_17	euxassay_006980_18	euxassay_006980_19

euxassay_006980_20	euxassay_006980_21	euxassay_006980_22	euxassay_006980_23	euxassay_006980_24

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

12310_wholemount_strong.wlz

12310_wholemount_moderate.wlz

12310_wholemount_weak.wlz

12310_wholemount_possible.wlz

12310_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:12310_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

left lung

strong

regional

strong expression: see section 03 04 05 06 07 08 09 10 11 12 13 14

right lung

strong

regional

strong expression: see section 14 15 16 17 18 19 20 21 22 23 24

Annotation Validation:

spatial mapping by EMAGE editor, text annotation by author

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T9979
Entity Detected:	Sftpc, surfactant associated protein C ( MGI:109517)
Sequence:	sense strand is shown >T9979 GAGGAGAGGAGAGAGAGAGAGAAACCTTACAAAATGGACATGAGTAGCAAAGAGGTCCTGATGGAGAGTC CACCGGATTACTCGGCAGGTCCCAGGAGCCAGTTCCGCATCCCCTGCTGTCCCGTGCACCTCAAACGCCT TCTCATCGTGGTTGTGGTGGTGGTCCTCGTTGTCGTGGTGATTGTAGGGGCTCTGCTCATGGGCCTCCAC ATGAGTCAAAAACATACTGAGATGGTCCTTGAGATGAGCATCGGAGCACCGGAAACTCAGAAACGCCTAG CCCCGAGTGAGCGAGCAGACACCATCGCTACCTTTTCCATCGGCTCCACTGGCATCGTTGTGTATGACTA CCAGCGGCTCCTGACGGCCTATAAGCCAGCTCCAGGAACCTACTGCTACATCATGAAGATGGCTCCAGAG AGCATCCCTAGTCTTGAGGCTTTCGCTAGAAAACTCCAGAACTTCCAGGCCAAGCCCTCCACACCCACCT CTAAGCTGGGCCAGGAGGAAGGGCATGATACTGGTTCCGAGTCCGATTCTTCCGGGAGAGACCTGGCTTT CCTAGGCCTTGCTGTGAGCACCCTGTGTGGAGAGCTACCACTCTACTATATCTAGCATCCACAGGGTCGG TAGAAACCGCAGCGGGACAGGAAAGACCCTCCGCAAAGGGTCTTTGTCAGACAAGCAGGAAGCTGCTCCT GCCCAGAAACCGGTGGAAGTCTGTAAAGGAAAGGTGTCTCTCCTACGGGCCAGGGGGATCCTATCACAAA AGAATAAAGCAGCCTGAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Notes:	The probe template was PCR amplified from IMAGE:30300758 using vector (pDNR-LIB) specific primers. Forward Primer - name:M13 forward (-21), sequence:TGTAAAACGACGGCCAGT; Reverse Primer - name:T3-pDNR-LIB rv, sequence:CAAATTAACCCTCACTAAAGGGTGTTCACTTACCTACTGGGC. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:30300758 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:12308 same embryo
	EMAGE:12305 same embryo
	EMAGE:12307 same embryo
	EMAGE:12306 same embryo
	EMAGE:12309 same embryo
	EurExpress:euxassay_006980 same experiment
	MGI:4828016 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source